Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 6.5e-167 590.9 349 100.0
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 1.1e-129 467.2 352 74.4
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 1.6e-128 463.4 349 71.3
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 6.5e-127 458.0 358 81.6
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 5.7e-123 444.9 352 69.6
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 5.7e-123 444.9 352 73.3
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 9.2e-121 437.6 353 70.3
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.2e-120 437.2 353 69.4
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.6e-120 436.8 356 79.5
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 2.7e-120 436.0 352 75.6
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 3.5e-120 435.6 352 73.9
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.7e-119 433.3 356 79.2
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 2.3e-119 433.0 353 74.2
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 3.8e-119 432.2 347 74.6
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 3.6e-117 425.6 356 68.3
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.8e-116 423.3 361 67.9
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 4.0e-116 422.2 358 69.8
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 3.4e-115 419.1 357 67.2
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 1.3e-114 417.2 359 69.1
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 1.3e-114 417.2 357 67.8
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 1.3e-114 417.2 357 67.8
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 1.3e-114 417.2 359 69.1
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 1.3e-114 417.2 353 73.4
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 3.7e-114 415.6 404 66.6
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 6.4e-114 414.8 353 70.3
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 1.1e-113 414.1 362 66.0
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 1.4e-113 413.7 357 68.9
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.2e-113 412.5 358 69.3
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.2e-113 412.5 353 66.9
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 9.2e-113 411.0 360 67.5
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 1.2e-112 410.6 378 65.6
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 1.6e-112 410.2 358 68.4
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 3.5e-112 409.1 351 75.2
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 1.3e-111 407.1 361 66.8
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.3e-111 406.4 358 67.6
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.9e-111 405.6 358 67.3
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 3.9e-111 405.6 353 68.8
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 5.0e-111 405.2 353 70.0
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.5e-110 403.7 358 67.0
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.5e-110 403.7 358 67.0
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 5.6e-110 401.7 354 63.8
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.2e-109 400.6 356 70.5
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 1.6e-109 400.2 351 68.4
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 2.8e-109 399.4 352 75.9
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 3.6e-109 399.1 351 68.1
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 4.7e-109 398.7 350 70.0
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 6.2e-109 398.3 372 67.2
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 2.3e-108 396.4 351 64.1
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 3.1e-108 396.0 356 74.2
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 6.8e-108 394.8 359 61.3
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 6.8e-108 394.8 355 68.7
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 1.2e-107 394.0 357 62.2
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 7.5e-107 391.3 359 65.2
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 3.7e-106 389.0 359 67.7
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 1.4e-105 387.1 359 65.7
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 2.4e-105 386.3 349 62.8
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 2.4e-105 386.3 359 67.7
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 4.1e-105 385.6 353 69.4
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 9.2e-105 384.4 356 67.1
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 2.7e-104 382.9 363 64.7
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 2.7e-104 382.9 351 66.1
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 6.0e-104 381.7 350 63.4
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.9e-102 376.7 360 68.1
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 2.1e-101 373.2 354 70.3
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 8.9e-100 367.9 334 65.6
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.6e-99 366.3 358 64.2
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 4.4e-99 365.5 362 68.5
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 1.3e-98 364.0 350 63.1
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 1.3e-98 364.0 300 74.7
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.7e-98 363.6 358 65.1
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 1.7e-98 363.6 335 68.4
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 7.1e-97 358.2 349 63.0
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 1.6e-96 357.1 354 62.4
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 2.1e-96 356.7 362 63.5
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.3e-95 354.0 350 63.7
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 7.3e-94 348.2 365 63.8
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 7.3e-94 348.2 361 62.3
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 1.1e-92 344.4 362 58.6
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 5.2e-92 342.0 369 65.3
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 2.0e-91 340.1 361 64.0
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 4.4e-91 339.0 359 56.8
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 4.1e-89 332.4 193 83.9
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 9.2e-89 331.3 192 82.8
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 1.2e-88 330.9 431 53.6
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 2.7e-88 329.7 352 57.4
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 4.6e-88 328.9 244 72.5
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 1.3e-87 327.4 365 53.7
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 2.3e-87 326.6 250 74.8
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 3.0e-87 326.2 294 63.3
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 3.9e-87 325.9 352 59.4
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 9.6e-86 321.2 354 54.5
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.4e-84 317.4 352 60.5
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 9.0e-84 314.7 351 57.5
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 6.4e-82 308.5 355 56.6
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 1.3e-79 300.8 279 63.4
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.3e-79 300.1 279 63.4
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 8.7e-79 298.1 395 58.7
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 2.9e-74 283.1 279 59.9
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 2.9e-74 283.1 281 60.9
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 3.9e-71 272.7 323 52.6
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 6.7e-71 271.9 247 64.0
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 9.6e-70 268.1 283 70.3
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 1.8e-68 263.8 230 62.6
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 9.0e-60 235.0 196 62.2
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 4.5e-59 232.6 245 63.3
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.1e-52 211.5 244 46.7
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 1.8e-52 210.7 240 49.2
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 4.2e-49 199.5 173 54.9
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 8.2e-45 185.3 241 43.2
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 3.1e-44 183.3 193 47.7
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.1e-25 121.7 82 69.5
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 3.7e-21 106.7 117 45.3
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.7e-18 97.8 189 33.9
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 5.0e-18 96.3 135 42.2
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 8.5e-18 95.5 72 63.9
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 3.6e-16 90.1 57 80.7
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 4.0e-15 86.7 191 32.5
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 2.8e-13 80.5 47 85.1
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 7.7e-11 72.4 44 70.5
Solyc05g013480.4 Solanum lycopersicum HOM05D006540 ORTHO05D008202 3.6e-08 63.5 197 45.2
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.0e-07 62.0 75 49.3


User provided reference genes

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