Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.9e-112 408.3 226 100.0
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 3.4e-92 342.0 228 80.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.7e-83 313.2 229 66.8
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.7e-83 313.2 230 72.2
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.2e-82 308.5 226 73.5
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.2e-81 307.0 226 73.0
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 2.1e-81 306.2 228 74.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 4.6e-81 305.1 235 73.6
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 6.0e-81 304.7 226 68.6
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 6.0e-81 304.7 226 69.9
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.3e-80 302.8 239 63.6
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 5.1e-80 301.6 231 72.3
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 6.6e-80 301.2 227 68.7
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 8.7e-80 300.8 229 64.2
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 5.6e-79 298.1 229 69.9
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 7.3e-79 297.7 232 72.4
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 9.6e-79 297.4 228 71.5
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 9.6e-79 297.4 228 71.5
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.3e-78 297.0 223 74.4
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.6e-78 296.6 232 72.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.6e-78 296.6 231 74.0
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.1e-78 296.2 227 70.5
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.8e-78 295.8 223 74.0
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 6.2e-78 294.7 232 64.2
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.4e-77 293.5 230 69.6
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.8e-77 293.1 230 68.3
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.8e-77 293.1 229 69.0
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 3.1e-77 292.4 226 67.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 5.3e-77 291.6 216 73.1
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 5.3e-77 291.6 229 66.4
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 9.0e-77 290.8 230 69.6
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 3.4e-76 288.9 237 67.5
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 7.6e-76 287.7 228 70.2
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 7.6e-76 287.7 229 69.9
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.7e-75 286.6 233 68.7
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.2e-75 286.2 235 68.1
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 6.4e-75 284.6 235 69.4
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.1e-74 283.9 220 65.5
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.4e-74 283.5 232 59.9
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.2e-74 282.0 232 70.7
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.4e-74 281.6 228 67.1
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 5.4e-74 281.6 231 67.1
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 7.1e-74 281.2 235 69.8
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 7.1e-74 281.2 228 68.0
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 9.3e-74 280.8 227 68.7
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.2e-73 280.4 228 64.9
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.2e-73 280.4 171 76.0
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.5e-73 278.9 223 62.8
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 6.0e-73 278.1 216 72.2
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.0e-72 277.3 229 67.7
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 2.3e-72 276.2 238 58.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.3e-72 276.2 228 66.7
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 3.9e-72 275.4 226 64.6
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 5.1e-72 275.0 228 66.2
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 5.1e-72 275.0 228 65.8
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 5.1e-72 275.0 227 65.6
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 8.7e-72 274.2 222 60.8
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.1e-71 273.9 269 62.1
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.9e-71 273.1 222 63.1
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.9e-71 273.1 229 64.2
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.3e-71 272.3 222 62.2
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 4.3e-71 271.9 221 61.1
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 4.3e-71 271.9 233 58.8
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 5.6e-71 271.6 225 60.0
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 5.6e-71 271.6 225 60.0
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 7.3e-71 271.2 232 67.2
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 9.6e-71 270.8 225 66.2
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.6e-70 270.0 234 66.7
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.1e-70 269.6 226 60.2
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.6e-70 268.9 216 61.1
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 4.8e-70 268.5 163 75.5
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 4.8e-70 268.5 220 63.2
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 4.8e-70 268.5 220 63.2
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 6.2e-70 268.1 225 62.2
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.2e-70 268.1 224 66.5
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.1e-70 267.7 226 61.9
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.1e-70 267.7 221 60.6
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-69 267.3 229 65.9
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.1e-69 267.3 222 60.4
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.1e-69 267.3 224 58.5
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.4e-69 266.9 227 61.7
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.8e-69 266.5 216 61.1
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.4e-69 266.2 168 73.8
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.4e-69 266.2 258 54.7
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.0e-69 265.4 224 64.3
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 4.0e-69 265.4 233 63.5
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.3e-69 265.0 227 61.2
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 6.9e-69 264.6 207 69.6
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 9.0e-69 264.2 224 58.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.2e-68 263.8 225 64.9
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.2e-68 263.8 264 54.9
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.6e-68 262.7 225 65.3
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.6e-68 262.7 224 57.6
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.6e-68 262.7 229 57.2
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 3.4e-68 262.3 253 59.7
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 4.5e-68 261.9 231 66.7
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 4.5e-68 261.9 251 63.3
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 5.8e-68 261.5 247 54.7
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 2.2e-67 259.6 231 64.5
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.9e-67 259.2 215 60.5
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.9e-67 258.5 207 62.3
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 4.9e-67 258.5 223 66.4
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 6.4e-67 258.1 231 55.8
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 8.4e-67 257.7 230 56.5
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 8.4e-67 257.7 245 63.3
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.9e-66 256.5 202 63.4
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.4e-66 256.1 219 56.6
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 4.2e-66 255.4 231 55.0
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.1e-65 253.1 212 58.0
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.1e-65 253.1 259 58.3
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.0e-64 250.8 240 57.5
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.8e-64 250.0 221 67.0
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 5.1e-64 248.4 167 68.9
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 6.7e-64 248.1 217 62.7
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.6e-63 245.0 140 78.6
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 5.6e-63 245.0 216 56.0
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 7.4e-63 244.6 221 62.0
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.3e-62 243.8 244 54.1
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.1e-62 243.0 222 61.7
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.8e-62 241.9 234 53.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 2.4e-61 239.6 229 61.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 5.3e-61 238.4 269 48.7
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 6.9e-61 238.0 225 59.1
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 9.0e-61 237.7 240 54.2
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.0e-60 236.5 227 55.1
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-60 236.5 227 55.1
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-60 236.5 227 55.1
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-60 236.5 227 55.1
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.5e-60 235.3 261 56.3
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.8e-59 232.3 197 68.0
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.8e-59 232.3 218 56.9
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-57 227.3 227 53.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.3e-56 223.0 146 71.9
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 9.6e-55 217.6 138 70.3
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.8e-54 216.1 147 71.4
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.7e-54 215.7 146 71.9
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 4.8e-54 215.3 143 69.9
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-53 212.2 147 68.0
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.7e-51 206.8 130 77.7
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.0e-51 205.3 138 70.3
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.2e-50 202.2 137 67.9
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 6.7e-48 194.9 174 58.0
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 5.7e-47 191.8 131 70.2
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 5.9e-44 181.8 127 68.5
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.9e-43 179.5 148 56.8
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.6e-41 173.7 158 50.6
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.2e-35 153.3 98 72.4
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.3e-32 143.3 146 54.8
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 9.7e-31 137.9 101 63.4
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.8e-30 135.6 235 40.9
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-29 134.0 97 71.1
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.4e-24 117.5 152 38.2
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 6.7e-24 115.2 112 50.9
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 5.3e-21 105.5 165 37.6
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 4.5e-20 102.4 123 39.8
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.0e-19 101.3 73 61.6
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 7.2e-18 95.1 148 36.5
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 5.2e-16 89.0 124 36.3
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 2.6e-15 86.7 80 55.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 7.5e-15 85.1 96 63.5
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 1.3e-14 84.3 119 34.5
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.3e-11 74.3 69 53.6
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.9e-10 70.5 94 58.5
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 2.5e-10 70.1 83 61.4
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.6e-09 67.4 85 56.5
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 3.0e-08 63.2 56 50.0
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 4.4e-07 59.3 63 44.4
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 5.7e-07 58.9 88 54.5


User provided reference genes

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