Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 1.1e-68 263.1 129 100.0
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 9.4e-55 216.9 130 83.1
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.2e-54 216.5 130 83.1
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 3.9e-53 211.5 130 80.8
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 6.7e-53 210.7 131 82.4
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 6.7e-53 210.7 132 80.3
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.1e-52 209.9 133 80.5
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.1e-52 209.9 133 80.5
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.1e-52 209.9 133 80.5
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 1.5e-52 209.5 135 77.8
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 2.0e-52 209.1 132 80.3
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 2.0e-52 209.1 135 80.0
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 2.0e-52 209.1 134 77.6
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.0e-52 209.1 132 77.3
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.0e-52 209.1 131 80.2
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.6e-52 208.8 130 80.0
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 2.6e-52 208.8 133 79.7
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 2.6e-52 208.8 129 80.6
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 3.3e-52 208.4 133 79.7
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 5.7e-52 207.6 130 76.9
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 9.7e-52 206.8 129 80.6
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.3e-51 206.5 133 79.7
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-51 206.5 132 79.5
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-51 206.5 132 79.5
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 1.3e-51 206.5 136 77.9
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.3e-51 206.5 132 78.8
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.3e-51 206.5 131 79.4
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 2.8e-51 205.3 135 77.8
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.8e-51 205.3 132 78.8
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 3.7e-51 204.9 132 78.0
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 6.3e-51 204.1 136 77.9
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 6.3e-51 204.1 132 77.3
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 76.7
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.4e-50 203.0 130 77.7
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.4e-50 203.0 130 76.9
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.8e-50 202.6 131 80.9
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.8e-50 202.6 132 78.8
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 2.4e-50 202.2 133 75.9
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.4e-50 202.2 132 78.8
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 3.1e-50 201.8 131 77.1
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 4.1e-50 201.4 130 75.4
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 4.1e-50 201.4 129 76.0
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 5.3e-50 201.1 130 76.2
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 5.3e-50 201.1 130 79.2
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.0e-50 200.7 132 75.8
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 7.0e-50 200.7 129 76.7
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 9.1e-50 200.3 131 76.3
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 9.1e-50 200.3 134 75.4
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 1.2e-49 199.9 131 76.3
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 1.2e-49 199.9 130 75.4
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.6e-49 199.5 134 74.6
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.6e-49 199.5 133 76.7
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 2.6e-49 198.7 130 73.8
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 2.6e-49 198.7 129 77.5
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.6e-49 198.7 132 78.0
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.6e-49 198.7 130 75.4
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 2.6e-49 198.7 131 77.9
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.5e-49 198.4 132 77.3
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 3.5e-49 198.4 136 72.8
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 4.5e-49 198.0 132 73.5
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 5.9e-49 197.6 132 72.7
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.9e-49 197.6 130 76.9
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 7.7e-49 197.2 132 76.5
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 7.7e-49 197.2 132 76.5
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 7.7e-49 197.2 135 75.6
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 7.7e-49 197.2 132 73.5
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 7.7e-49 197.2 132 73.5
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.0e-48 196.8 132 74.2
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 1.0e-48 196.8 129 75.2
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.0e-48 196.8 130 76.2
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-48 196.4 131 77.9
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 1.3e-48 196.4 131 76.3
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 2.2e-48 195.7 132 72.0
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 2.2e-48 195.7 131 74.8
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 2.2e-48 195.7 130 73.8
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.2e-48 195.7 131 74.0
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 2.9e-48 195.3 129 71.3
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 2.9e-48 195.3 147 72.1
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.8e-48 194.9 133 73.7
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 3.8e-48 194.9 136 74.3
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 3.8e-48 194.9 132 72.7
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 5.0e-48 194.5 134 72.4
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 6.5e-48 194.1 130 71.5
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 8.5e-48 193.7 129 72.1
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 1.1e-47 193.4 133 72.2
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.1e-47 193.4 129 75.2
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.5e-47 193.0 131 73.3
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 1.9e-47 192.6 130 70.8
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 2.5e-47 192.2 129 75.2
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 3.2e-47 191.8 131 71.8
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 4.2e-47 191.4 129 72.9
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 4.2e-47 191.4 130 69.2
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 5.5e-47 191.0 129 71.3
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 9.4e-47 190.3 129 73.6
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.2e-46 189.9 129 70.5
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.1e-46 189.1 129 69.8
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 2.1e-46 189.1 131 71.8
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.1e-46 189.1 118 82.2
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.7e-46 188.7 134 70.9
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 4.7e-46 188.0 129 71.3
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 4.7e-46 188.0 119 79.8
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.0e-45 186.8 135 68.9
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.4e-45 186.4 129 69.0
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.4e-45 186.4 128 71.9
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.4e-45 186.4 128 71.9
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.4e-45 186.4 125 72.8
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 3.0e-45 185.3 137 70.8
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.0e-45 185.3 123 75.6
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.0e-45 185.3 129 72.9
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 6.7e-45 184.1 135 68.1
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 6.7e-45 184.1 135 68.9
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 8.8e-45 183.7 135 68.1
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.2e-44 183.3 135 68.1
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.2e-44 183.3 136 68.4
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.2e-44 183.3 135 68.1
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.5e-44 183.0 136 69.1
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.5e-44 183.0 135 68.1
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.5e-44 183.0 135 68.1
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.0e-44 182.6 135 68.1
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 2.6e-44 182.2 135 67.4
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 2.6e-44 182.2 135 68.1
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 2.6e-44 182.2 132 68.9
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.6e-44 182.2 132 68.9
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.6e-44 182.2 135 71.9
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 7.5e-44 180.6 135 67.4
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 9.7e-44 180.3 117 74.4
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 9.7e-44 180.3 136 67.6
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.3e-43 179.9 132 66.7
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.7e-43 179.5 114 77.2
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 2.2e-43 179.1 136 66.9
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 2.8e-43 178.7 136 66.9
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 2.8e-43 178.7 136 66.9
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 2.8e-43 178.7 136 66.9
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 2.8e-43 178.7 128 68.0
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 6.3e-43 177.6 119 69.7
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 8.2e-43 177.2 119 69.7
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 1.8e-42 176.0 127 72.4
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.2e-41 173.3 121 70.2
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 2.7e-41 172.2 108 76.9
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 7.7e-41 170.6 127 68.5
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 6.5e-40 167.5 118 68.6
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 8.5e-40 167.2 122 68.0
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.1e-39 166.8 138 64.5
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 2.7e-38 162.2 129 61.2
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 6.8e-37 157.5 125 58.4
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 8.8e-37 157.1 91 82.4
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.3e-35 153.3 104 71.2
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 1.1e-34 150.2 104 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 3.5e-33 145.2 125 58.4
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.2e-28 130.2 86 76.7
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.5e-28 129.8 116 53.4
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 6.3e-27 124.4 78 75.6
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 2.4e-26 122.5 76 80.3
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.4e-21 106.7 74 73.0
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.2e-20 103.6 74 70.3
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.4e-20 101.7 76 71.1
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 7.5e-20 100.9 60 83.3
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 3.7e-19 98.6 72 65.3
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 4.9e-19 98.2 56 83.9
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 4.1e-18 95.1 79 60.8
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.8e-13 79.7 51 68.6
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 1.2e-12 77.0 95 37.9
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 1.0e-08 63.9 73 49.3
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 3.3e-07 58.9 58 58.6


User provided reference genes

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