Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 4.5e-80 301.2 153 100.0
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 83.7
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 85.0
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 5.1e-68 261.2 153 83.7
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 5.1e-68 261.2 153 84.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 83.0
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 2.0e-67 259.2 153 84.3
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 2.0e-67 259.2 153 81.0
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 81.7
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 5.7e-67 257.7 151 80.8
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 9.7e-67 256.9 150 81.3
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 81.7
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.3e-66 256.5 153 83.7
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.7e-66 256.1 153 83.7
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.7e-66 256.1 153 81.7
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 83.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 81.0
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.7e-66 255.0 150 83.3
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.7e-66 255.0 153 81.7
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.8e-66 254.6 148 84.5
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 4.8e-66 254.6 153 80.4
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 81.0
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 80.4
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 81.0
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.8e-65 252.7 153 81.7
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 4.1e-65 251.5 153 79.1
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 5.3e-65 251.1 153 79.7
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.0e-65 250.8 151 80.1
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 7.0e-65 250.8 152 80.9
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 9.1e-65 250.4 153 78.4
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.0e-64 249.2 153 79.1
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.0e-64 249.2 150 82.0
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 77.1
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 80.4
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.5e-64 248.4 153 80.4
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.5e-64 248.4 151 80.8
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.5e-64 248.4 150 80.0
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 4.5e-64 248.1 150 80.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 5.9e-64 247.7 153 77.1
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 5.9e-64 247.7 151 78.1
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 5.9e-64 247.7 150 80.0
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 5.9e-64 247.7 151 79.5
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 7.7e-64 247.3 151 79.5
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.7e-64 247.3 151 80.1
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 1.0e-63 246.9 151 78.8
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.0e-63 246.9 151 81.5
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.3e-63 246.5 151 80.1
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.3e-63 246.5 153 77.8
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.3e-63 246.5 145 81.4
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 2.9e-63 245.4 151 76.8
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.8e-63 245.0 151 78.1
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 77.8
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 6.5e-63 244.2 150 79.3
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.5e-63 244.2 155 78.7
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 73.9
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 8.5e-63 243.8 152 78.9
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 75.2
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 78.4
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.1e-62 243.4 151 77.5
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.9e-62 242.7 151 78.1
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 1.9e-62 242.7 145 81.4
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 1.9e-62 242.7 153 75.8
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-62 242.7 150 78.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.9e-62 242.7 153 77.8
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.5e-62 242.3 150 77.3
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 77.1
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 74.5
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 79.7
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 5.5e-62 241.1 151 74.2
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 7.2e-62 240.7 153 75.8
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 77.8
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.4e-62 240.4 154 77.3
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 73.2
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 73.2
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.6e-61 239.6 155 75.5
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.6e-61 239.6 152 78.3
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 75.8
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.7e-61 238.8 153 77.1
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.7e-61 238.8 152 73.7
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.6e-61 238.4 150 76.7
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 3.6e-61 238.4 151 75.5
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 6.1e-61 237.7 151 72.2
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.4e-60 236.5 153 76.5
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.4e-60 236.5 153 73.2
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 72.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.3e-60 235.7 153 77.1
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.0e-60 235.3 153 77.1
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 3.0e-60 235.3 153 73.9
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 5.2e-60 234.6 153 71.9
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 6.7e-60 234.2 151 76.2
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 6.7e-60 234.2 150 74.0
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 6.7e-60 234.2 153 74.5
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 2.6e-59 232.3 151 74.2
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.6e-59 232.3 151 75.5
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 4.4e-59 231.5 153 72.5
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.3e-58 229.9 148 77.7
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.7e-58 229.6 150 75.3
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 8.2e-58 227.3 153 71.9
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.4e-57 226.5 153 69.3
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.8e-57 226.1 149 75.2
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 1.8e-57 226.1 151 73.5
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 1.8e-57 226.1 153 69.3
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.8e-57 226.1 148 73.0
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 2.4e-57 225.7 150 72.0
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 3.1e-57 225.3 150 71.3
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 3.1e-57 225.3 153 69.3
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 4.1e-57 224.9 150 70.0
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 7.0e-57 224.2 153 68.6
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 9.1e-57 223.8 150 71.3
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.2e-56 223.4 152 69.1
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.6e-56 223.0 153 69.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.6e-56 223.0 153 68.6
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 2.0e-56 222.6 150 68.7
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 2.0e-56 222.6 151 69.5
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 3.5e-56 221.9 150 70.0
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 4.5e-56 221.5 155 72.3
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.0e-55 220.3 151 70.2
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-55 219.9 155 71.0
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 8.5e-55 217.2 153 68.6
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.5e-54 216.5 150 72.7
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.2e-54 215.3 151 68.2
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 1.0e-52 210.3 168 61.9
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.4e-51 204.9 143 72.0
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.1e-49 200.3 153 63.4
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.2e-48 196.8 120 80.0
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.6e-48 196.4 153 60.1
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.7e-47 193.0 119 76.5
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.2e-47 192.6 122 77.0
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-46 189.5 153 64.1
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 1.6e-45 186.4 145 57.9
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.8e-44 183.0 128 68.8
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 3.4e-43 178.7 181 56.4
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 5.7e-43 177.9 153 56.9
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 6.3e-42 174.5 111 73.0
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.2e-40 170.2 111 71.2
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 7.3e-38 161.0 149 51.7
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 4.1e-33 145.2 95 75.8
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 9.2e-33 144.1 78 87.2
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.3e-31 139.4 75 85.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 3.3e-30 135.6 144 48.6
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 9.5e-30 134.0 121 57.9
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.2e-28 128.3 100 67.0
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.5e-27 126.7 75 77.3
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.2e-24 117.1 67 80.6
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 2.7e-24 115.9 75 74.7
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 3.5e-24 115.5 80 72.5
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 1.0e-23 114.0 75 77.3
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-23 113.6 65 80.0
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 6.6e-23 111.3 75 72.0
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.5e-22 110.2 89 64.0
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.3e-18 97.1 149 38.3
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.7e-10 70.1 50 70.0
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 5.1e-07 58.5 74 50.0


User provided reference genes

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