Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 3.3e-43 177.9 88 100.0
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.2e-29 132.9 85 72.9
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 1.5e-27 125.9 81 72.8
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 1.6e-26 122.5 86 67.4
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 2.8e-26 121.7 78 69.2
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 1.4e-25 119.4 81 71.6
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 2.4e-25 118.6 76 76.3
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.4e-25 118.6 79 74.7
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 3.1e-25 118.2 81 67.9
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 5.3e-25 117.5 81 69.1
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.2e-24 116.3 76 67.1
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.2e-24 116.3 76 67.1
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.2e-24 116.3 79 68.4
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.5e-24 115.9 88 64.8
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 2.0e-24 115.5 86 62.8
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.5e-24 114.4 87 67.8
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 4.5e-24 114.4 71 77.5
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 4.5e-24 114.4 84 66.7
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 5.8e-24 114.0 84 67.9
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 5.8e-24 114.0 76 75.0
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.8e-24 114.0 86 64.0
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.8e-24 114.0 86 64.0
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.8e-24 114.0 86 64.0
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 7.6e-24 113.6 87 59.8
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 7.6e-24 113.6 87 59.8
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.0e-23 113.2 76 67.1
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.0e-23 113.2 80 65.0
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.0e-23 113.2 75 73.3
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 1.0e-23 113.2 75 70.7
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.0e-23 113.2 77 68.8
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.0e-23 113.2 77 71.4
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.0e-23 113.2 82 70.7
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.0e-23 113.2 81 71.6
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 1.3e-23 112.8 74 68.9
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 2.2e-23 112.1 80 63.8
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 2.2e-23 112.1 80 65.0
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 2.9e-23 111.7 87 59.8
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.9e-23 111.7 86 66.3
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 3.8e-23 111.3 82 62.2
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 3.8e-23 111.3 84 67.9
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 6.5e-23 110.5 80 67.5
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.4e-23 110.2 82 69.5
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 8.4e-23 110.2 74 70.3
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.1e-22 109.8 87 57.5
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 1.1e-22 109.8 79 62.0
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.1e-22 109.8 81 66.7
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 2.5e-22 108.6 71 73.2
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 3.2e-22 108.2 75 69.3
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 4.2e-22 107.8 78 67.9
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 4.2e-22 107.8 86 58.1
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 5.5e-22 107.5 81 61.7
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 5.5e-22 107.5 75 69.3
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 9.3e-22 106.7 86 54.7
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 1.2e-21 106.3 69 75.4
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.6e-21 105.9 70 68.6
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.6e-21 105.9 79 63.3
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.6e-21 105.9 73 65.8
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 2.1e-21 105.5 81 61.7
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.7e-21 105.1 76 61.8
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 3.5e-21 104.8 74 66.2
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 3.5e-21 104.8 80 65.0
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.3e-20 102.1 77 68.8
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 8.7e-20 100.1 69 66.7
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.1e-19 99.8 72 66.7
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 1.1e-19 99.8 81 59.3
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.1e-19 99.8 86 55.8
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-19 99.8 86 52.3
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-19 99.8 77 67.5
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.1e-19 99.8 86 52.3
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.5e-19 99.4 80 60.0
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.5e-19 98.6 86 52.3
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.5e-19 98.6 72 65.3
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 3.3e-19 98.2 75 65.3
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 4.3e-19 97.8 76 61.8
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.3e-19 97.8 89 61.8
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 5.7e-19 97.4 83 57.8
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.4e-19 97.1 75 64.0
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.4e-19 97.1 75 64.0
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.4e-19 97.1 75 64.0
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 7.4e-19 97.1 75 64.0
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 9.7e-19 96.7 86 54.7
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 9.7e-19 96.7 76 61.8
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 1.3e-18 96.3 78 57.7
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.6e-18 95.9 87 52.9
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.2e-18 95.5 72 62.5
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.8e-18 95.1 75 61.3
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 2.8e-18 95.1 78 61.5
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 3.7e-18 94.7 86 57.0
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 4.8e-18 94.4 75 62.7
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.8e-18 94.4 75 62.7
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 8.2e-18 93.6 74 56.8
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.1e-17 93.2 76 61.8
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.1e-17 93.2 67 64.2
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.4e-17 92.8 69 63.8
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.8e-17 92.4 86 50.0
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 2.4e-17 92.0 64 70.3
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 2.4e-17 92.0 86 51.2
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.4e-17 92.0 68 66.2
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 2.4e-17 92.0 81 58.0
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.1e-17 91.7 84 52.4
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 4.1e-17 91.3 87 54.0
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 4.1e-17 91.3 86 51.2
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 5.3e-17 90.9 75 58.7
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 9.0e-17 90.1 75 61.3
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.2e-16 89.7 74 56.8
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.5e-16 89.4 81 53.1
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.5e-16 89.4 81 53.1
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 1.5e-16 89.4 75 57.3
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.5e-16 89.4 80 50.0
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 2.0e-16 89.0 74 59.5
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 2.6e-16 88.6 82 51.2
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.5e-16 87.8 80 48.8
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 5.9e-16 87.4 68 58.8
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.0e-15 86.7 71 56.3
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 3.2e-14 81.6 77 54.5
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 3.2e-14 81.6 77 54.5
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 4.6e-13 77.8 73 50.7
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 6.1e-13 77.4 56 66.1
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 2.5e-11 72.0 51 68.6
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 3.3e-11 71.6 54 66.7
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 5.7e-11 70.9 54 63.0
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 5.3e-09 64.3 67 52.2
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 6.9e-09 63.9 46 65.2
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.2e-08 63.2 54 57.4
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.3e-07 59.7 73 43.8
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 2.2e-07 58.9 56 53.6
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.1e-06 56.6 82 39.0
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.2e-06 53.9 55 58.2
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 9.4e-06 53.5 39 61.5


User provided reference genes

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