Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 4.3e-168 594.7 333 100.0
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.2e-50 202.2 338 43.8
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.1e-49 199.9 336 45.8
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.5e-48 197.6 334 41.3
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.6e-48 196.8 334 41.3
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 4.9e-47 192.6 336 42.0
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 3.5e-45 186.4 354 42.4
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 6.0e-45 185.7 336 44.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 2.3e-44 183.7 344 43.9
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.9e-44 183.0 337 40.4
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 3.9e-44 183.0 334 47.6
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.9e-43 180.6 363 44.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.5e-43 180.3 358 41.6
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 2.5e-43 180.3 346 44.5
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.5e-43 180.3 337 40.9
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 2.5e-43 180.3 312 40.1
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.6e-43 179.1 363 39.9
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.3e-43 178.7 358 41.9
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.2e-42 177.9 326 44.5
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.1e-42 177.2 359 37.9
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 2.8e-42 176.8 339 40.1
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.8e-42 176.8 363 43.5
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 4.7e-42 176.0 335 43.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 4.7e-42 176.0 358 42.2
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 6.2e-42 175.6 314 43.3
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.0e-41 172.9 318 34.6
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 5.2e-41 172.6 324 34.6
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 8.9e-41 171.8 345 42.6
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 4.4e-40 169.5 334 43.7
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 4.4e-40 169.5 360 37.5
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 5.8e-40 169.1 316 43.7
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.7e-39 167.5 357 40.3
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 3.8e-39 166.4 332 41.6
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.4e-38 163.7 346 42.8
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 4.2e-38 162.9 322 37.0
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 5.4e-38 162.5 321 36.4
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.5e-37 159.8 324 38.0
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 1.7e-36 157.5 311 39.2
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.0e-36 156.8 322 41.6
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.1e-36 156.0 322 42.9
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 8.7e-36 155.2 329 40.7
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.9e-35 154.1 310 39.7
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.3e-34 151.4 353 34.0
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 2.1e-34 150.6 343 39.4
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.8e-34 150.2 324 36.4
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.2e-34 149.1 329 35.6
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 6.2e-34 149.1 326 42.9
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.1e-33 148.3 326 44.5
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.4e-33 147.1 333 41.1
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 2.4e-33 147.1 324 45.4
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.1e-33 146.7 335 40.9
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 4.0e-33 146.4 335 40.9
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 6.9e-33 145.6 304 40.1
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.2e-32 144.8 330 34.2
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 2.0e-32 144.1 337 40.1
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.0e-32 144.1 288 38.2
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.6e-32 143.7 335 34.3
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.4e-32 143.3 323 37.5
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 3.4e-32 143.3 320 34.4
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 9.9e-32 141.7 323 38.1
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.3e-31 141.4 325 42.5
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.7e-31 141.0 329 34.0
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 3.8e-31 139.8 305 36.7
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.4e-31 138.7 343 32.9
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.9e-30 137.5 337 32.9
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.2e-30 136.3 334 40.4
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 5.4e-30 136.0 332 32.8
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.6e-29 134.4 342 39.5
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.6e-29 134.4 324 34.0
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 4.6e-29 132.9 329 40.7
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 6.0e-29 132.5 333 36.3
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 6.0e-29 132.5 324 36.4
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.0e-28 131.7 318 43.4
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.7e-28 131.0 321 38.6
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 3.0e-28 130.2 317 42.0
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 3.0e-28 130.2 317 42.0
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 5.1e-28 129.4 325 33.8
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-27 128.3 317 39.1
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.1e-27 128.3 317 39.1
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 2.5e-27 127.1 321 43.3
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.5e-27 127.1 311 40.8
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 5.6e-27 125.9 323 42.1
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 9.6e-27 125.2 330 33.9
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.8e-26 123.6 314 34.4
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 3.6e-26 123.2 332 42.8
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 6.2e-26 122.5 326 42.3
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 8.1e-26 122.1 350 37.1
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.1e-25 121.7 333 40.2
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 2.4e-25 120.6 308 33.4
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 4.0e-25 119.8 326 41.7
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 4.0e-25 119.8 326 42.3
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 5.3e-25 119.4 319 39.8
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 5.3e-25 119.4 320 30.9
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 9.0e-25 118.6 330 40.3
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 4.5e-24 116.3 321 41.1
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 5.8e-24 115.9 322 41.6
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 7.6e-24 115.5 319 40.4
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 7.6e-24 115.5 310 32.9
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.3e-23 114.8 329 31.9
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.2e-23 114.0 306 40.8
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.2e-23 114.0 288 36.5
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.9e-22 110.9 306 36.6
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 4.2e-22 109.8 327 37.0
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 7.1e-22 109.0 326 40.5
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.7e-21 107.1 303 42.6
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.5e-21 106.7 288 35.8
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 7.9e-21 105.5 201 41.3
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.8e-20 104.4 305 30.2
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.0e-20 103.6 188 42.0
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.0e-20 103.6 305 30.5
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 5.1e-20 102.8 334 32.3
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 6.7e-20 102.4 305 30.5
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 8.7e-20 102.1 306 35.9
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.9e-19 100.9 266 36.1
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.5e-19 100.5 314 34.7
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 3.3e-19 100.1 310 38.4
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 3.3e-19 100.1 310 38.4
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 3.3e-19 100.1 310 38.4
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.3e-19 100.1 311 31.8
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 5.6e-19 99.4 320 30.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.3e-18 98.2 299 39.8
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 2.1e-18 97.4 145 40.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 6.2e-18 95.9 205 37.6
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 8.1e-18 95.5 307 35.8
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 5.3e-17 92.8 306 33.0
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.3e-17 92.8 278 36.7
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 9.0e-17 92.0 322 28.9
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.2e-16 91.7 308 36.7
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.5e-16 91.3 262 38.5
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 4.5e-16 89.7 318 29.2
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.2e-15 87.4 307 35.8
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 3.8e-15 86.7 313 29.4
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.4e-14 84.7 183 35.5
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.9e-14 84.3 193 39.4
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 5.5e-14 82.8 157 33.8
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 5.5e-14 82.8 305 28.2
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.6e-13 81.3 300 34.7
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.6e-13 81.3 290 37.6
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 2.1e-13 80.9 262 36.3
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.5e-13 80.1 176 33.0
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.6e-13 79.7 308 36.0
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.3e-12 78.2 320 27.8
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 2.3e-12 77.4 83 48.2
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 6.7e-12 75.9 315 27.0
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.9e-11 74.3 310 27.7
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.5e-11 73.9 320 27.2
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 4.3e-11 73.2 301 35.2
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 2.1e-10 70.9 272 34.6
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 8.2e-10 68.9 240 30.8
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 1.1e-09 68.6 115 38.3
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.1e-09 68.6 156 37.2
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 2.2e-07 60.8 289 32.9


User provided reference genes

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