Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.9e-89 332.4 163 100.0
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.8e-79 299.3 151 96.0
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 7.6e-78 293.9 163 82.8
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.2e-77 292.4 163 85.3
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 3.8e-77 291.6 163 81.6
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.1e-75 285.8 162 81.5
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.5e-75 285.0 163 80.4
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 4.6e-75 284.6 163 81.0
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.8e-74 282.7 163 78.5
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.8e-74 282.7 163 79.8
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.8e-74 282.7 163 82.2
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 2.3e-74 282.3 163 79.8
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 3.9e-74 281.6 163 79.8
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 8.7e-74 280.4 163 79.1
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.1e-73 280.0 163 79.8
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.1e-73 280.0 163 79.1
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 3.3e-73 278.5 163 77.3
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 3.3e-73 278.5 163 79.8
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.3e-73 278.1 163 78.5
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 9.7e-73 276.9 163 78.5
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 9.7e-73 276.9 163 78.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 80.4
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 77.9
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 76.1
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 6.3e-72 274.2 163 77.9
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.4e-71 273.1 163 77.9
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.8e-71 272.7 163 77.3
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 4.1e-71 271.6 163 77.3
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 76.1
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 76.1
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 77.3
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.2e-70 270.0 163 76.1
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.5e-70 269.6 163 77.3
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 77.9
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 76.7
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 76.1
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 77.3
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 77.9
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 76.1
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 74.8
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 5.9e-70 267.7 159 76.7
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.0e-69 266.9 163 76.1
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.0e-69 266.9 163 74.8
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.0e-69 266.9 162 75.9
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.0e-69 266.9 162 76.5
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 77.3
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 76.7
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 77.3
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 77.3
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 2.9e-69 265.4 163 74.8
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.1e-68 263.5 163 76.7
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.4e-68 263.1 162 75.9
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 7.2e-68 260.8 148 80.4
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 7.2e-68 260.8 163 74.2
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 3.6e-67 258.5 151 77.5
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.4e-66 256.5 163 74.8
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.4e-66 256.5 163 72.4
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.8e-66 256.1 163 71.8
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.8e-66 256.1 151 76.8
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 3.9e-66 255.0 153 75.8
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 3.9e-66 255.0 153 75.8
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 6.7e-66 254.2 163 73.0
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 8.8e-66 253.8 140 82.1
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 1.5e-65 253.1 165 75.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.5e-65 253.1 165 75.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 2.0e-65 252.7 165 75.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-65 252.3 165 75.2
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 3.3e-65 251.9 153 76.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 5.7e-65 251.1 152 75.7
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 5.7e-65 251.1 148 76.4
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 7.4e-65 250.8 154 75.3
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 7.4e-65 250.8 163 73.0
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 7.4e-65 250.8 154 74.0
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 2.2e-64 249.2 153 73.2
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.8e-64 248.8 154 73.4
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 6.3e-64 247.7 154 72.7
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 8.2e-64 247.3 147 77.6
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.4e-63 245.7 152 75.0
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 3.1e-63 245.4 165 71.5
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 5.3e-63 244.6 162 69.8
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 6.9e-63 244.2 165 72.1
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 6.9e-63 244.2 147 75.5
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 6.9e-63 244.2 147 75.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.2e-62 243.4 146 76.0
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.2e-62 243.4 165 73.3
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.5e-62 243.0 152 75.0
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.9e-62 241.1 141 78.0
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.3e-61 240.0 165 70.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.2e-61 239.2 165 69.7
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 2.2e-61 239.2 164 70.7
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 2.9e-61 238.8 164 68.3
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 3.8e-61 238.4 165 69.7
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.9e-60 236.1 165 69.7
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.9e-60 236.1 144 74.3
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.9e-60 236.1 144 74.3
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.9e-60 236.1 163 68.7
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 5.5e-60 234.6 147 72.8
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.4e-60 233.8 137 77.4
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.2e-59 233.4 163 67.5
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.2e-59 233.4 142 76.1
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 4.7e-59 231.5 157 67.5
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 6.1e-59 231.1 178 63.5
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.0e-58 230.3 163 67.5
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.3e-58 229.2 165 67.3
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 3.0e-58 228.8 163 66.3
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.1e-57 226.9 162 64.8
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.7e-57 224.6 124 84.7
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.3e-56 223.4 160 67.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.2e-56 222.6 146 69.9
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.8e-56 221.5 142 71.1
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 1.1e-55 220.3 136 72.1
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 9.1e-55 217.2 163 67.5
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.2e-54 216.9 139 71.9
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 3.5e-54 215.3 146 67.8
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 5.0e-53 211.5 163 64.4
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 9.7e-49 197.2 108 85.2
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 7.0e-47 191.0 163 57.1
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 3.5e-46 188.7 163 55.8
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 4.7e-43 178.3 163 58.9
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 5.2e-42 174.9 123 70.7
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.7e-40 168.7 124 68.5
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.8e-39 166.4 123 61.8
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 3.1e-39 165.6 149 57.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 7.7e-38 161.0 104 71.2
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 8.5e-37 157.5 164 51.2
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 8.5e-37 157.5 164 50.6
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.9e-36 156.4 176 52.3
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 3.2e-36 155.6 176 52.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 2.3e-34 149.4 163 48.5
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 3.0e-34 149.1 123 57.7
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 8.8e-34 147.5 165 47.9
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 2.6e-33 146.0 97 69.1
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.2e-32 142.9 164 47.0
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 4.5e-30 135.2 90 71.1
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.5e-28 129.4 137 49.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.8e-27 125.9 140 46.4
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.5e-22 109.0 67 82.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.9e-16 89.4 63 61.9
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.0e-13 80.9 122 37.7
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.7e-13 80.1 53 73.6
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 2.1e-11 73.2 62 61.3
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.3e-10 69.7 49 65.3
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 3.7e-08 62.4 91 41.8
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 6.4e-08 61.6 58 55.2
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.4e-07 60.5 46 60.9


User provided reference genes

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