Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 1.7e-180 636.0 332 100.0
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 3.7e-103 379.0 324 71.0
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 1.1e-102 377.5 324 69.1
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 9.4e-99 364.4 326 65.6
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 7.9e-98 361.3 323 65.9
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 2.2e-95 353.2 323 65.9
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 5.9e-93 345.1 325 64.3
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 6.5e-92 341.7 327 62.7
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 1.1e-91 340.9 327 63.9
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 3.2e-91 339.3 323 63.2
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 1.2e-90 337.4 329 62.0
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 8.0e-90 334.7 329 62.0
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 1.0e-89 334.3 333 62.8
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.0e-89 334.3 317 64.4
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 1.8e-89 333.6 317 64.4
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 2.0e-88 330.1 324 61.1
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 9.7e-88 327.8 317 63.4
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 1.3e-87 327.4 325 61.2
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 1.3e-87 327.4 328 61.3
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 1.7e-87 327.0 325 61.2
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.2e-87 326.6 325 61.2
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 6.3e-87 325.1 326 60.7
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 1.4e-86 323.9 312 60.3
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.8e-86 323.6 325 62.5
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 7.0e-86 321.6 326 60.4
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 1.2e-85 320.9 323 61.3
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 2.0e-85 320.1 326 60.1
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 7.7e-85 318.2 326 59.8
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 7.7e-85 318.2 326 59.8
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 2.9e-84 316.2 329 60.5
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 2.9e-84 316.2 329 61.4
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 1.5e-83 313.9 319 61.1
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 5.5e-83 312.0 326 59.8
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 7.2e-83 311.6 325 60.0
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 1.2e-82 310.8 329 59.3
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 1.6e-82 310.5 363 55.9
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 2.7e-82 309.7 326 58.9
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 1.0e-81 307.8 336 58.0
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 2.3e-81 306.6 336 57.7
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 3.0e-81 306.2 331 58.9
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 1.2e-80 304.3 339 56.9
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 2.6e-80 303.1 322 59.9
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 2.8e-79 299.7 327 59.0
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 3.1e-78 296.2 326 56.7
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 5.3e-78 295.4 327 57.2
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 7.0e-78 295.0 289 63.3
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 5.9e-77 292.0 332 57.8
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 5.9e-77 292.0 337 55.2
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 1.1e-75 287.7 339 56.0
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 3.2e-75 286.2 333 54.7
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 2.7e-74 283.1 332 54.2
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 6.1e-74 282.0 344 55.2
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 4.0e-73 279.3 336 56.5
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 6.8e-73 278.5 340 54.4
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 2.8e-71 273.1 315 49.5
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 5.9e-69 265.4 313 47.9
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 1.0e-68 264.6 320 55.9
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 8.6e-68 261.5 322 47.5
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 1.9e-67 260.4 313 47.0
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 3.6e-66 256.1 313 47.3
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 5.2e-65 252.3 336 53.0
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 4.4e-64 249.2 282 58.5
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 4.4e-64 249.2 320 53.8
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 7.5e-64 248.4 320 52.5
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 1.3e-63 247.7 320 52.5
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 1.7e-63 247.3 320 53.8
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 2.8e-63 246.5 329 48.3
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 3.7e-63 246.1 318 46.2
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 2.4e-62 243.4 299 48.5
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 2.4e-62 243.4 327 45.0
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 4.1e-62 242.7 320 52.8
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 4.1e-62 242.7 300 47.3
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 4.1e-62 242.7 301 56.8
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 5.4e-62 242.3 320 51.6
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 7.0e-62 241.9 320 52.5
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 2.7e-61 240.0 321 53.3
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 3.5e-61 239.6 318 52.8
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 7.8e-61 238.4 320 52.5
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 1.1e-59 234.6 320 52.2
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 1.5e-59 234.2 312 44.6
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 3.3e-59 233.0 310 44.2
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 5.6e-59 232.3 300 45.0
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 2.1e-58 230.3 320 51.2
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 2.1e-58 230.3 246 52.4
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 3.6e-58 229.6 321 52.0
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 4.7e-58 229.2 266 50.8
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 5.2e-57 225.7 321 51.1
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 3.4e-56 223.0 342 45.9
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 1.7e-55 220.7 354 47.5
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 3.7e-55 219.5 254 48.8
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 1.1e-54 218.0 228 51.8
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 1.2e-53 214.5 286 51.4
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 3.0e-52 209.9 248 49.2
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 2.3e-49 200.3 326 38.3
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 1.3e-47 194.5 322 38.5
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 1.1e-43 181.4 284 50.7
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 1.9e-43 180.6 258 44.2
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 4.7e-42 176.0 331 44.1
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 6.2e-42 175.6 262 43.5
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 1.7e-39 167.5 262 42.0
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 9.2e-38 161.8 264 42.0
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 4.4e-32 142.9 182 45.1
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 3.0e-28 130.2 288 35.4
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 5.1e-28 129.4 312 31.7
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 2.2e-23 114.0 158 43.7
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 5.4e-22 109.4 181 37.0
ATR0421G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 8.7e-20 102.1 48 89.6
CDE02G2139 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 3.3e-19 100.1 132 47.7
CSS0034598 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 3.6e-18 96.7 45 88.9
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 1.1e-14 85.1 85 56.5
Solyc10g038030.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 1.5e-11 74.7 170 32.4
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 1.4e-09 68.2 78 46.2
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 2.4e-09 67.4 89 43.8
Manes.03G017100 Manihot esculenta HOM05D001564 ORTHO05D001439 1.2e-08 65.1 147 28.6
AL6G37290 Arabidopsis lyrata HOM05D001564 ORTHO05D001439 2.6e-08 63.9 156 28.8
DCAR_003041 Daucus carota HOM05D001564 ORTHO05D001439 3.4e-08 63.5 173 28.9
BraA02t08936Z Brassica rapa HOM05D001564 ORTHO05D001439 1.3e-07 61.6 157 29.3
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 1.3e-07 61.6 94 41.5
BcaNung07111 Brassica carinata HOM05D001564 ORTHO05D001439 2.9e-07 60.5 156 28.2
C02p59490 Brassica napus HOM05D001564 ORTHO05D001439 2.9e-07 60.5 156 28.2
BolC2t12012H Brassica oleracea HOM05D001564 ORTHO05D001439 2.9e-07 60.5 156 28.2
Thhalv10005026m.g Eutrema salsugineum HOM05D001564 ORTHO05D001439 2.9e-07 60.5 156 27.6
Os02g0203700 Oryza sativa ssp. japonica HOM05D001564 ORTHO05D001439 2.9e-07 60.5 184 27.2
Sopen10g011120 Solanum pennellii HOM05D006394 ORTHO05D008057 2.9e-07 60.5 48 56.2
A02p39710 Brassica napus HOM05D001564 ORTHO05D001439 3.8e-07 60.1 156 28.2
Hund26490 Selenicereus undatus HOM05D001564 ORTHO05D001439 4.9e-07 59.7 167 28.1
CBR_g82288 Chara braunii HOM05D006394 ORTHO05D008057 6.4e-07 59.3 32 68.8
MD15G1176000 Malus domestica HOM05D001564 ORTHO05D001439 6.4e-07 59.3 145 27.6
BcaB07g29995 Brassica carinata HOM05D001564 ORTHO05D001439 1.4e-06 58.2 156 28.2
ATR0421G002 Amborella trichopoda HOM05D006394 ORTHO05D008057 1.9e-06 57.8 114 36.0
THA.LOC104826539 Tarenaya hassleriana HOM05D001564 ORTHO05D001439 1.9e-06 57.8 149 29.5
FAN15G3262 Fragaria x ananassa HOM05D001564 ORTHO05D001439 3.2e-06 57.0 189 31.7
FAN27G2421 Fragaria x ananassa HOM05D001564 ORTHO05D001439 3.2e-06 57.0 189 30.2
Sed0001195 Sechium edule HOM05D001564 ORTHO05D001439 3.2e-06 57.0 150 27.3
THA.LOC104809001 Tarenaya hassleriana HOM05D001564 ORTHO05D001439 4.2e-06 56.6 149 29.5
A06p36200 Brassica napus HOM05D001564 ORTHO05D001439 5.5e-06 56.2 150 28.7
C07p42330 Brassica napus HOM05D001564 ORTHO05D001439 5.5e-06 56.2 150 28.7
BolC7t44762H Brassica oleracea HOM05D001564 ORTHO05D001439 5.5e-06 56.2 150 28.7
BraA06t26541Z Brassica rapa HOM05D001564 ORTHO05D001439 5.5e-06 56.2 150 28.7
CANSAT11G0701 Cannabis sativa HOM05D001564 ORTHO05D001439 5.5e-06 56.2 145 26.9
FvH4_2g29540 Fragaria vesca HOM05D001564 ORTHO05D001439 5.5e-06 56.2 191 34.6
FAN24G1530 Fragaria x ananassa HOM05D001564 ORTHO05D001439 5.5e-06 56.2 191 34.6
Lalb_Chr08g0243981 Lupinus albus HOM05D001564 ORTHO05D001439 9.3e-06 55.5 152 28.3


User provided reference genes

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