Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 1.0e-190 669.8 334 100.0
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.9e-124 449.1 328 68.9
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 7.9e-114 414.5 313 69.0
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 6.7e-113 411.4 328 65.5
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 5.7e-112 408.3 322 67.1
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 2.8e-111 406.0 301 69.4
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 1.2e-109 400.6 293 70.0
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.2e-109 400.6 279 70.6
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 2.0e-109 399.8 293 70.0
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.0e-108 397.5 330 63.0
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 1.0e-108 397.5 302 68.5
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 6.5e-108 394.8 327 64.8
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 2.5e-107 392.9 317 66.6
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 4.2e-107 392.1 297 68.4
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 9.4e-107 391.0 279 68.8
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.2e-106 390.6 317 66.2
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.6e-106 390.2 280 69.3
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 2.1e-106 389.8 327 64.2
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 2.7e-106 389.4 329 61.4
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.7e-106 389.4 318 66.7
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 6.1e-106 388.3 330 61.5
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 8.0e-106 387.9 282 68.1
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 8.0e-106 387.9 331 62.2
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 8.0e-106 387.9 318 63.8
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.4e-105 387.1 278 69.1
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.3e-105 386.3 318 66.4
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.0e-105 386.0 272 70.6
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 6.7e-105 384.8 302 66.6
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 8.8e-105 384.4 294 68.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 1.5e-104 383.6 294 67.7
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.0e-104 383.3 317 64.4
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 2.0e-104 383.3 294 67.7
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.6e-104 382.9 294 67.3
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 2.6e-104 382.9 288 66.7
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 5.7e-104 381.7 296 69.3
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.5e-104 381.3 318 65.4
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 7.5e-104 381.3 280 67.9
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.3e-103 380.6 280 68.2
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 4.8e-103 378.6 294 65.6
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.1e-102 377.5 275 67.3
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.1e-102 377.5 289 65.4
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 1.4e-102 377.1 302 64.2
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.8e-102 376.7 268 68.3
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.4e-102 376.3 295 65.1
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.4e-102 376.3 277 66.8
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 4.1e-102 375.6 295 65.1
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 9.1e-102 374.4 282 66.0
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.6e-101 373.6 323 61.6
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 2.0e-101 373.2 322 61.2
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 2.0e-101 373.2 324 61.7
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.7e-101 372.9 270 68.5
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 2.7e-101 372.9 295 65.1
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 4.5e-101 372.1 296 64.2
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 5.9e-101 371.7 279 67.4
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 5.9e-101 371.7 342 57.0
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 7.7e-101 371.3 296 64.2
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 7.7e-101 371.3 295 64.1
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 2.2e-100 369.8 259 69.5
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 2.2e-100 369.8 295 64.4
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 5.0e-100 368.6 279 67.0
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 6.5e-100 368.2 302 63.2
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 8.5e-100 367.9 262 69.5
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.9e-99 366.7 256 69.1
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 1.9e-99 366.7 295 63.4
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 5.5e-99 365.2 327 59.0
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 7.2e-99 364.8 285 63.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 7.2e-99 364.8 259 70.3
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.2e-98 364.0 271 65.7
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.2e-98 364.0 265 67.9
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 3.0e-97 359.4 326 56.7
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 4.0e-97 359.0 325 57.5
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 8.8e-97 357.8 264 64.8
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.2e-96 357.5 279 65.6
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 4.4e-96 355.5 269 65.4
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 7.5e-96 354.8 262 66.4
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 9.8e-96 354.4 279 65.2
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 9.8e-96 354.4 329 58.1
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 9.8e-96 354.4 274 62.4
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 1.3e-95 354.0 396 52.3
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.8e-95 352.8 270 65.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 3.7e-95 352.4 272 65.1
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 3.7e-95 352.4 263 68.8
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.4e-94 350.5 234 71.8
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 1.8e-94 350.1 266 66.2
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 7.0e-94 348.2 259 66.0
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.6e-93 347.1 271 64.6
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 1.6e-93 347.1 269 62.1
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 7.7e-93 344.7 259 65.6
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 1.3e-92 344.0 211 78.7
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 2.2e-92 343.2 277 62.5
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 2.9e-92 342.8 249 68.7
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 5.0e-92 342.0 261 64.4
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 6.5e-92 341.7 362 55.0
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 8.5e-92 341.3 277 61.7
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 8.5e-92 341.3 277 61.7
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.1e-91 340.9 276 62.3
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.1e-91 340.9 268 62.3
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 6.1e-90 335.1 247 68.0
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 3.0e-89 332.8 262 63.7
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 7.5e-88 328.2 232 67.7
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 2.4e-86 323.2 292 57.5
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 5.4e-86 322.0 272 59.6
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.0e-86 321.6 272 59.6
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-84 317.4 272 59.2
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 5.0e-84 315.5 211 72.5
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 8.0e-82 308.1 323 54.2
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 4.4e-80 302.4 336 50.3
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 9.8e-80 301.2 246 63.8
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 4.9e-79 298.9 181 81.8
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 5.0e-76 288.9 273 54.2
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 2.5e-75 286.6 242 59.9
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 6.2e-74 282.0 188 70.2
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 2.0e-69 266.9 206 61.7
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.1e-65 254.6 229 53.7
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 6.8e-65 251.9 208 62.0
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 5.8e-64 248.8 235 51.9
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 3.2e-54 216.5 212 50.0
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 3.3e-51 206.5 258 46.9
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 8.7e-44 181.8 120 74.2
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 5.6e-43 179.1 119 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 7.1e-38 162.2 133 58.6
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 9.0e-25 118.6 83 67.5
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 5.7e-19 99.4 68 72.1
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.8e-18 97.1 61 75.4
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.8e-18 97.1 61 75.4
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 8.2e-18 95.5 163 38.0
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.8e-17 94.4 68 69.1
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 3.4e-16 90.1 171 35.1
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.2e-15 87.4 223 30.9
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.1e-14 85.1 160 33.1
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.1e-14 85.1 160 32.5
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.9e-14 84.3 160 32.5
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 2.5e-14 84.0 217 31.3
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 4.2e-14 83.2 262 29.8
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 4.2e-14 83.2 157 31.8
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 4.2e-14 83.2 156 33.3
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 5.5e-14 82.8 214 30.4
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 5.5e-14 82.8 160 31.2
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 5.5e-14 82.8 160 32.5
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 9.3e-14 82.0 160 31.2
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 1.6e-13 81.3 156 33.3
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.6e-13 81.3 194 29.9
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.6e-13 81.3 214 29.9
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.1e-13 80.9 223 28.7
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.1e-13 80.9 131 34.4
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 2.1e-13 80.9 131 34.4
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 2.7e-13 80.5 156 31.4
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.7e-13 80.5 160 31.2
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.7e-13 80.5 156 32.1
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 3.6e-13 80.1 163 31.3
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 3.6e-13 80.1 163 31.3
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 4.6e-13 79.7 157 31.2
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 6.1e-13 79.3 145 31.7
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 6.1e-13 79.3 143 33.6
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 7.9e-13 79.0 262 28.6
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 7.9e-13 79.0 138 32.6
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 7.9e-13 79.0 157 30.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 7.9e-13 79.0 157 29.3
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.0e-12 78.6 222 29.3
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 1.0e-12 78.6 160 30.0
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.3e-12 77.4 177 29.4
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 3.9e-12 76.6 157 31.2
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 5.1e-12 76.3 131 34.4
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 5.1e-12 76.3 78 52.6
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.5e-11 73.9 152 30.3
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 2.5e-11 73.9 140 34.3
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 7.4e-11 72.4 217 24.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 2.8e-10 70.5 124 32.3
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 4.8e-10 69.7 255 27.1
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 6.3e-10 69.3 215 28.4
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 8.2e-10 68.9 119 31.1
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.4e-09 68.2 214 28.5
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 4.1e-09 66.6 90 36.7
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 5.3e-09 66.2 125 32.0
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 3.4e-08 63.5 122 28.7
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 5.9e-08 62.8 176 29.5
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.0e-07 62.0 206 24.3
Sed0016733 Sechium edule HOM05D002832 ORTHO05D008667 8.5e-07 58.9 194 31.4
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 1.1e-06 58.5 136 32.4
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.1e-06 58.5 129 30.2
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 1.9e-06 57.8 175 29.7


User provided reference genes

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