Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 4.6e-155 551.2 283 100.0
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.8e-112 409.1 244 80.3
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.5e-108 396.7 292 69.5
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 9.4e-108 394.0 273 75.5
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 9.4e-108 394.0 250 79.2
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 4.7e-107 391.7 245 80.8
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 2.3e-106 389.4 278 73.4
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 4.0e-106 388.7 248 79.0
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 6.7e-106 387.9 263 76.0
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 6.7e-106 387.9 247 77.7
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 8.8e-106 387.5 263 75.7
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.2e-105 387.1 244 79.5
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.5e-105 386.7 283 71.4
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 3.3e-105 385.6 238 79.8
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.7e-105 384.8 265 74.0
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 7.5e-105 384.4 247 78.9
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 9.7e-105 384.0 256 77.0
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.7e-104 383.3 292 68.5
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 2.2e-104 382.9 243 78.6
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.8e-104 382.5 244 79.9
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.8e-104 382.5 247 76.9
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 3.7e-104 382.1 289 69.6
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 6.3e-104 381.3 250 76.8
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.1e-103 380.6 255 74.9
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.4e-103 380.2 278 71.9
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.4e-103 379.4 245 76.7
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.4e-103 379.4 245 76.7
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 2.4e-103 379.4 282 70.6
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 4.1e-103 378.6 244 77.0
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.3e-103 378.3 249 76.3
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 9.1e-103 377.5 249 76.3
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.2e-102 377.1 250 75.2
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.0e-101 374.0 242 76.9
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.1e-100 370.5 234 78.2
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.5e-100 370.2 247 75.3
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.9e-100 369.8 243 77.0
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 1.9e-100 369.8 248 75.4
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 4.2e-100 368.6 239 76.6
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.7e-99 365.9 227 80.2
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 3.6e-99 365.5 258 70.5
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 4.7e-99 365.2 275 70.2
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 6.1e-99 364.8 231 79.2
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 6.1e-99 364.8 271 70.1
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.4e-98 363.6 230 78.3
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.4e-98 363.6 281 66.9
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.8e-98 363.2 275 69.1
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.3e-98 362.8 235 77.0
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 2.3e-98 362.8 231 78.8
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 2.3e-98 362.8 291 66.7
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 3.0e-98 362.5 244 75.0
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 3.0e-98 362.5 244 74.6
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 4.0e-98 362.1 240 74.2
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 4.0e-98 362.1 243 74.1
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 5.2e-98 361.7 263 71.1
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.2e-97 360.5 240 74.6
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.2e-97 360.5 230 77.8
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 1.2e-97 360.5 231 78.4
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.2e-97 360.5 261 70.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.0e-97 359.8 286 66.1
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 4.4e-97 358.6 240 74.2
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 5.7e-97 358.2 238 75.6
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 9.8e-97 357.5 287 66.6
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 9.8e-97 357.5 253 73.5
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.7e-96 356.7 239 74.5
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.8e-96 355.9 244 72.5
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 3.7e-96 355.5 246 72.0
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 4.8e-96 355.1 232 75.9
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 8.3e-96 354.4 244 72.1
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.1e-95 354.0 242 72.7
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-95 354.0 278 65.8
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.1e-95 354.0 245 71.4
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.4e-95 353.6 300 62.7
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.4e-95 353.6 246 70.3
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 1.8e-95 353.2 253 73.9
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 1.8e-95 353.2 279 67.4
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 3.1e-95 352.4 247 69.6
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 5.4e-95 351.7 245 70.6
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 7.0e-95 351.3 247 69.2
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.2e-94 350.5 247 71.7
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 2.0e-94 349.7 238 73.5
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 5.9e-94 348.2 271 65.3
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 2.3e-93 346.3 248 67.7
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 2.3e-93 346.3 243 70.4
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.9e-93 345.9 257 67.7
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 3.8e-93 345.5 245 69.4
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 8.6e-93 344.4 238 72.7
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 3.6e-91 339.0 219 75.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.3e-88 330.5 257 68.1
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 8.3e-88 327.8 242 68.2
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 9.2e-87 324.3 268 65.3
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 2.9e-85 319.3 255 64.3
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 9.5e-84 314.3 250 66.4
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 5.2e-82 308.5 228 73.2
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 3.4e-81 305.8 238 67.6
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 4.4e-81 305.4 275 56.4
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 9.8e-81 304.3 236 68.6
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 2.2e-80 303.1 272 57.4
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 3.7e-80 302.4 248 63.3
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 8.3e-80 301.2 204 75.0
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 5.4e-79 298.5 267 57.7
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 1.1e-76 290.8 208 69.2
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 7.3e-76 288.1 231 60.6
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.5e-73 280.4 257 58.4
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.4e-71 273.9 184 73.9
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 9.2e-71 271.2 206 68.0
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.7e-69 266.9 233 57.1
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.4e-66 257.3 259 56.4
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.8e-59 233.0 140 79.3
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.9e-48 195.7 149 67.8
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 2.4e-47 193.4 220 48.2
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 6.6e-45 185.3 223 46.2
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 9.3e-39 164.9 214 41.1
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.6e-35 154.1 110 68.2
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 2.2e-32 143.7 86 82.6
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 3.5e-30 136.3 137 54.0
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 3.2e-23 113.2 69 79.7
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 8.7e-21 105.1 82 59.8
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 2.2e-19 100.5 111 51.4
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 6.3e-19 99.0 68 64.7
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.8e-18 97.4 56 82.1
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 5.3e-18 95.9 60 76.7
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.2e-17 94.7 171 39.2
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.1e-15 88.2 64 67.2
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.4e-15 87.8 63 71.4
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 3.2e-15 86.7 63 61.9
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 8.8e-13 78.6 51 72.5
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 8.8e-13 78.6 51 76.5
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 8.8e-13 78.6 170 35.9
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.7e-11 74.3 49 71.4
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.4e-10 71.2 53 64.2
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.4e-10 71.2 103 42.7
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 9.1e-10 68.6 45 71.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 8.5e-08 62.0 83 44.6
RcHm_v2.0_Chr1g0313101 Rosa chinensis HOM05D005950 ORTHO05D342078 6.1e-06 55.8 36 72.2


User provided reference genes

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