Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 6.6e-120 434.1 227 100.0
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 5.6e-111 404.4 229 91.3
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.6e-110 402.9 227 92.5
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 6.2e-110 401.0 230 90.4
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.1e-109 400.2 227 91.2
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.1e-109 400.2 227 91.2
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 4.0e-109 398.3 227 90.7
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 6.8e-109 397.5 227 91.2
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 8.9e-109 397.1 227 92.1
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 1.2e-108 396.7 226 90.7
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 2.0e-108 396.0 227 90.3
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 2.6e-108 395.6 227 91.6
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.6e-108 395.6 229 91.3
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 2.6e-108 395.6 227 90.7
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 3.4e-108 395.2 229 89.1
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.4e-108 394.8 229 90.8
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 4.4e-108 394.8 227 90.3
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 4.4e-108 394.8 229 89.5
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 7.6e-108 394.0 227 90.3
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 9.9e-108 393.7 227 90.7
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 9.9e-108 393.7 226 91.2
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 9.9e-108 393.7 227 90.7
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.3e-107 393.3 227 91.2
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.3e-107 393.3 227 90.3
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.3e-107 393.3 227 90.7
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.7e-107 392.9 227 90.7
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.7e-107 392.9 227 90.7
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 2.2e-107 392.5 227 90.7
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.9e-107 392.1 225 91.1
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 2.9e-107 392.1 225 89.8
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.9e-107 392.1 225 89.8
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 4.9e-107 391.3 227 90.3
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 6.4e-107 391.0 230 89.1
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 8.3e-107 390.6 221 91.4
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 8.3e-107 390.6 227 90.3
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 8.3e-107 390.6 230 89.6
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.1e-106 390.2 231 87.9
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.1e-106 390.2 234 87.2
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 1.1e-106 390.2 227 89.9
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 1.9e-106 389.4 232 88.8
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 1.9e-106 389.4 232 87.1
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 2.4e-106 389.0 227 87.7
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 3.2e-106 388.7 231 88.3
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 4.1e-106 388.3 225 88.9
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 4.1e-106 388.3 225 88.9
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 5.4e-106 387.9 231 87.4
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 5.4e-106 387.9 227 89.9
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 5.4e-106 387.9 227 89.4
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 5.4e-106 387.9 227 89.4
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.4e-106 387.9 227 89.0
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 5.4e-106 387.9 229 87.8
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 5.4e-106 387.9 235 86.8
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 7.1e-106 387.5 227 89.9
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 7.1e-106 387.5 227 89.9
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 7.1e-106 387.5 227 89.9
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 7.1e-106 387.5 227 89.0
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 9.2e-106 387.1 230 88.3
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.2e-105 386.7 227 88.5
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.2e-105 386.7 231 87.9
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.2e-105 386.7 222 89.6
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 1.6e-105 386.3 231 86.6
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.6e-105 386.3 227 89.4
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.6e-105 386.3 231 86.1
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.6e-105 386.3 223 90.1
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 2.1e-105 386.0 231 88.3
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 3.5e-105 385.2 232 86.2
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 4.6e-105 384.8 229 88.2
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 4.6e-105 384.8 227 89.9
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 7.8e-105 384.0 227 86.8
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.7e-104 382.9 216 92.1
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.7e-104 382.9 224 88.8
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.7e-104 382.9 229 87.8
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 1.7e-104 382.9 232 86.6
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.7e-104 382.9 227 88.1
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.7e-104 382.9 232 86.6
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.1e-104 381.3 256 81.6
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 5.1e-104 381.3 230 88.3
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 6.6e-104 380.9 232 85.3
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 8.6e-104 380.6 233 85.8
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 8.6e-104 380.6 231 87.4
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 8.6e-104 380.6 227 87.2
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 8.6e-104 380.6 227 87.7
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.5e-103 379.8 227 88.1
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.9e-103 379.4 224 88.8
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 2.5e-103 379.0 231 85.7
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.5e-103 379.0 228 87.7
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.5e-103 379.0 223 87.4
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 4.3e-103 378.3 231 85.3
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.3e-103 378.3 225 88.0
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 5.6e-103 377.9 225 88.0
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.2e-102 376.7 220 86.8
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 1.6e-102 376.3 221 88.2
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 2.1e-102 375.9 226 87.6
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.1e-102 375.9 214 90.7
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.8e-102 375.6 228 86.8
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 2.8e-102 375.6 232 85.3
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 4.7e-102 374.8 231 84.8
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 4.7e-102 374.8 229 85.2
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 8.1e-102 374.0 224 85.3
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.1e-101 373.6 227 84.6
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.4e-101 372.5 224 83.5
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 5.2e-101 371.3 229 84.3
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 1.5e-100 369.8 205 92.2
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.5e-100 369.8 208 92.3
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.0e-100 369.4 231 85.7
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 2.6e-100 369.0 231 83.1
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 4.4e-100 368.2 225 83.6
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 5.8e-100 367.9 207 93.2
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 8.4e-99 364.0 222 83.8
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.2e-98 362.1 205 91.7
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 3.9e-96 355.1 228 82.9
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 4.3e-95 351.7 298 66.8
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 2.6e-92 342.4 233 79.8
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 6.4e-91 337.8 192 91.1
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.9e-87 326.2 221 76.5
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.6e-86 322.0 214 78.0
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 6.2e-86 321.2 207 79.7
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 7.9e-81 304.3 190 84.7
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 1.1e-79 300.4 179 89.4
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 4.3e-79 298.5 186 86.0
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 8.1e-78 294.3 208 75.5
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 7.6e-76 287.7 161 93.8
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 1.1e-74 283.9 158 93.0
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 1.9e-74 283.1 158 93.7
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.5e-74 282.7 158 93.0
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 4.2e-74 282.0 176 84.7
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 1.3e-72 276.9 154 93.5
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 3.9e-72 275.4 192 79.2
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-70 270.0 186 76.9
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 6.2e-70 268.1 180 78.9
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.1e-69 267.3 161 86.3
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 2.5e-63 246.1 160 80.6
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 6.7e-56 221.5 124 93.5
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 6.9e-53 211.5 161 74.5
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.1e-45 187.6 110 92.7
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 5.0e-43 178.7 103 90.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 3.2e-42 176.0 102 91.2
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.6e-36 157.1 158 57.6
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.8e-35 152.5 88 93.2
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 6.3e-30 135.2 79 83.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 6.1e-25 118.6 206 37.4
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 4.0e-24 115.9 81 77.8
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.7e-22 110.5 57 93.0
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 2.3e-19 100.1 63 79.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.1e-17 93.6 62 77.4
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.5e-15 87.4 65 66.2
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.1e-10 71.2 46 76.1


User provided reference genes

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