Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 5.9e-85 317.4 149 100.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.1e-58 229.2 143 75.5
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 3.6e-58 228.4 150 73.3
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 3.6e-58 228.4 145 74.5
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 3.6e-58 228.4 141 75.2
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.8e-57 226.1 141 76.6
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.3e-57 225.7 136 77.2
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 2.3e-57 225.7 146 74.0
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.0e-57 225.3 143 72.7
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.2e-57 224.6 140 75.7
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 6.8e-57 224.2 138 76.1
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 2.0e-56 222.6 139 74.8
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.6e-56 222.2 141 73.8
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.6e-56 222.2 141 73.8
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.4e-56 221.9 139 74.1
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 4.4e-56 221.5 137 76.6
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.7e-56 221.1 141 73.0
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.7e-56 221.1 139 76.3
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.3e-55 219.9 138 76.1
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.3e-55 219.9 141 74.5
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 2.2e-55 219.2 137 74.5
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-55 219.2 141 73.0
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 3.7e-55 218.4 141 71.6
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 4.9e-55 218.0 143 72.7
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.1e-54 216.9 138 74.6
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 2.4e-54 215.7 140 72.1
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 3.2e-54 215.3 141 72.3
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 3.2e-54 215.3 141 72.3
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.2e-54 215.3 178 60.7
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 4.1e-54 214.9 135 74.8
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 5.4e-54 214.5 149 70.5
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 5.4e-54 214.5 143 72.0
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 9.2e-54 213.8 149 70.5
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.6e-53 213.0 141 68.8
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.0e-53 212.6 141 70.2
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.7e-53 212.2 138 73.2
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 2.7e-53 212.2 141 73.0
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 4.6e-53 211.5 136 74.3
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 4.6e-53 211.5 147 67.3
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 6.0e-53 211.1 144 69.4
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 1.0e-52 210.3 144 69.4
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-52 209.9 149 70.5
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.3e-52 209.9 146 73.3
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 3.9e-52 208.4 143 69.9
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 6.6e-52 207.6 136 73.5
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 8.6e-52 207.2 145 69.0
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.5e-51 206.5 137 68.6
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.5e-51 206.5 138 69.6
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 1.9e-51 206.1 145 69.0
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 2.5e-51 205.7 136 70.6
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.3e-51 205.3 145 69.0
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 3.3e-51 205.3 138 71.7
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 7.3e-51 204.1 140 70.7
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 9.5e-51 203.8 145 68.3
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.2e-50 203.4 138 71.7
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.6e-50 203.0 145 68.3
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.6e-50 203.0 140 70.0
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.6e-50 203.0 140 70.0
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.6e-50 203.0 139 67.6
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.6e-50 203.0 134 73.9
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.6e-50 203.0 141 67.4
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.1e-50 202.6 137 67.2
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.6e-50 201.8 145 68.3
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 4.7e-50 201.4 140 70.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.1e-49 200.3 139 70.5
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.1e-49 200.3 145 67.6
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.4e-49 199.9 137 67.2
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.4e-49 199.9 137 65.7
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.4e-49 199.9 142 69.0
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.8e-49 199.5 142 68.3
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.3e-49 199.1 138 71.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 3.1e-49 198.7 142 69.0
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.0e-49 198.4 145 66.2
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 5.2e-49 198.0 143 66.4
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 5.2e-49 198.0 143 66.4
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.6e-48 195.7 137 68.6
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.6e-48 195.7 145 66.2
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.6e-48 195.7 137 68.6
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 3.4e-48 195.3 139 68.3
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 4.4e-48 194.9 137 69.3
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 9.8e-48 193.7 137 69.3
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 9.8e-48 193.7 141 61.7
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 9.8e-48 193.7 141 61.7
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-47 193.4 136 67.6
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.9e-47 192.2 140 66.4
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-47 192.2 138 67.4
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.7e-47 191.8 138 67.4
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 6.4e-47 191.0 135 65.9
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.4e-47 191.0 135 65.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 6.4e-47 191.0 137 66.4
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 6.4e-47 191.0 137 66.4
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 6.4e-47 191.0 137 66.4
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 8.3e-47 190.7 143 60.8
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 8.3e-47 190.7 143 58.7
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.1e-46 190.3 144 65.3
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.1e-46 190.3 130 71.5
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-46 189.9 138 65.9
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.9e-46 189.5 128 72.7
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.9e-46 189.5 139 67.6
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.9e-46 189.5 140 67.9
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.4e-46 189.1 138 65.9
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.2e-46 188.7 142 59.2
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-46 188.7 138 65.2
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 3.2e-46 188.7 143 62.9
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 4.1e-46 188.3 137 65.0
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.4e-46 188.0 136 61.8
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 5.4e-46 188.0 136 67.6
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.2e-45 186.8 139 66.9
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.2e-45 186.8 139 66.9
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.6e-45 186.4 137 61.3
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.6e-45 186.4 141 63.1
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 6.0e-45 184.5 138 62.3
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 6.0e-45 184.5 138 62.3
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 5.0e-44 181.4 141 59.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.6e-44 180.6 134 60.4
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.1e-43 180.3 140 64.3
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.5e-43 179.9 140 60.0
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.9e-43 179.5 143 63.6
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.9e-43 179.5 131 64.9
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-42 176.8 137 59.1
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.4e-41 173.3 137 62.8
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.8e-41 172.9 138 62.3
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 2.3e-41 172.6 140 60.0
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 3.1e-41 172.2 142 59.2
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 5.2e-41 171.4 146 57.5
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 8.9e-41 170.6 144 58.3
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 8.9e-41 170.6 139 61.9
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.0e-40 169.5 141 56.7
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.4e-40 168.3 139 61.2
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-39 166.8 139 60.4
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 4.9e-39 164.9 146 55.5
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.4e-39 164.5 201 46.3
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 6.4e-39 164.5 146 55.5
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.4e-38 163.3 137 56.2
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 3.2e-38 162.2 142 61.3
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 4.1e-38 161.8 137 59.9
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 4.1e-38 161.8 98 73.5
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 7.1e-38 161.0 135 56.3
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.0e-36 157.1 144 54.9
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 6.6e-36 154.5 137 59.1
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 4.3e-35 151.8 140 49.3
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.2e-34 150.2 146 52.7
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.6e-34 149.8 140 52.9
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.4e-33 146.7 115 65.2
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.4e-33 146.7 97 69.1
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 2.4e-33 146.0 114 66.7
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 2.6e-32 142.5 138 48.6
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-30 136.7 138 52.9
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 2.4e-30 136.0 141 48.9
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 9.2e-30 134.0 136 50.0
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 2.1e-29 132.9 138 50.7
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.1e-28 128.3 146 45.9
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-26 123.6 128 54.7
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 7.6e-24 114.4 134 50.0
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 5.1e-20 101.7 128 42.2
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.3e-18 97.1 76 64.5
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 6.2e-18 94.7 104 50.0
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.4e-17 93.6 72 55.6
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.1e-17 92.4 120 45.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 7.6e-16 87.8 53 67.9
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.3e-15 87.0 54 68.5
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.9e-15 85.9 104 45.2
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 4.9e-15 85.1 67 64.2
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-14 84.0 74 62.2
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 3.5e-13 79.0 58 70.7
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 3.5e-13 79.0 64 65.6
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 2.0e-08 63.2 33 69.7
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 5.8e-08 61.6 64 51.6


User provided reference genes

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