Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 0.0e+00 1591.6 846 100.0
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 3.2e-268 928.7 840 62.4
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 2.7e-259 899.0 834 59.5
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 4.9e-253 878.2 856 58.2
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 4.2e-252 875.2 874 57.1
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 1.2e-251 873.6 852 57.7
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 2.4e-247 859.4 857 57.5
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 2.0e-246 856.3 836 56.6
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 3.8e-245 852.0 854 56.8
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 4.9e-245 851.7 868 55.2
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 4.6e-243 845.1 882 56.2
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 7.9e-243 844.3 854 56.4
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 3.0e-242 842.4 841 56.0
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 8.7e-242 840.9 866 55.2
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 3.7e-240 835.5 867 55.5
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 3.7e-240 835.5 831 57.8
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 4.8e-240 835.1 873 56.0
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.1e-239 833.9 854 56.4
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 1.8e-239 833.2 870 55.2
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 2.4e-239 832.8 828 57.6
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 6.9e-239 831.2 840 55.8
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 9.0e-239 830.9 870 55.5
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.0e-238 829.7 853 55.2
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 5.8e-238 828.2 871 55.3
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 1.0e-237 827.4 857 56.0
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.7e-237 826.6 830 57.8
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 2.9e-237 825.9 854 55.9
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 3.8e-237 825.5 859 55.6
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 1.9e-236 823.2 875 55.8
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 3.2e-236 822.4 871 54.8
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 4.2e-236 822.0 989 50.4
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 7.9e-235 817.8 857 55.1
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 8.7e-234 814.3 866 53.9
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 9.6e-233 810.8 907 52.3
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 2.8e-232 809.3 862 54.1
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 4.8e-232 808.5 854 54.4
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 3.1e-231 805.8 862 53.8
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 4.1e-231 805.4 860 53.5
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 5.3e-231 805.1 834 55.4
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 7.6e-230 801.2 862 53.7
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.0e-229 800.8 864 53.8
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 3.8e-229 798.9 858 53.8
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 6.5e-229 798.1 864 53.9
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 1.4e-228 797.0 866 54.5
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.6e-227 793.5 868 53.6
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 3.9e-226 788.9 870 53.2
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 4.1e-223 778.9 854 53.0
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 3.8e-221 772.3 866 52.9
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 6.5e-221 771.5 825 53.7
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 7.9e-219 764.6 860 52.2
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.4e-218 763.8 863 51.8
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 3.9e-218 762.3 849 52.8
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.1e-218 761.9 849 52.7
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 6.7e-218 761.5 853 53.2
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 2.0e-217 760.0 853 52.6
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 4.3e-217 758.8 849 52.5
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 7.4e-217 758.1 858 51.2
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 2.2e-216 756.5 983 48.8
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 3.7e-216 755.7 862 51.6
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 4.1e-215 752.3 853 51.7
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 9.1e-215 751.1 849 52.3
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 1.5e-214 750.4 868 51.3
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 1.5e-214 750.4 868 51.3
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 2.6e-214 749.6 873 51.5
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 3.8e-213 745.7 864 51.2
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 6.5e-213 745.0 854 52.1
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 6.5e-213 745.0 875 51.5
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 1.9e-212 743.4 860 51.5
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 2.5e-212 743.0 834 53.2
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 3.2e-212 742.7 864 51.0
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.2e-211 740.7 863 50.5
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 1.0e-210 737.6 716 57.8
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 6.7e-210 734.9 890 48.8
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 6.7e-210 734.9 840 51.4
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 2.0e-209 733.4 840 51.2
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 4.8e-208 728.8 831 51.1
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 3.5e-206 722.6 869 50.5
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.1e-204 717.6 861 49.6
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 9.1e-199 698.0 801 51.3
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 1.9e-196 690.3 859 49.6
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 3.6e-195 686.0 854 48.0
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 4.7e-195 685.6 803 50.3
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.4e-194 684.1 877 48.5
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 4.8e-192 675.6 1004 43.7
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 6.3e-192 675.2 862 48.5
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 3.8e-189 666.0 851 47.8
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 8.5e-189 664.8 856 47.8
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 1.1e-188 664.5 889 47.8
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 3.2e-188 662.9 856 47.9
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 5.5e-188 662.1 860 48.7
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 3.6e-187 659.4 710 52.8
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 4.7e-187 659.1 821 48.6
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.5e-185 654.1 840 48.1
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.4e-185 652.9 865 46.6
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 8.3e-184 648.3 819 48.4
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 7.0e-183 645.2 896 46.2
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 1.2e-182 644.4 862 45.1
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 2.7e-182 643.3 846 46.7
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 7.7e-182 641.7 863 46.0
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 1.1e-180 637.9 646 55.7
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 2.5e-180 636.7 851 47.4
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 2.9e-176 623.2 855 45.8
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 1.4e-175 620.9 842 46.6
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 1.4e-175 620.9 851 44.4
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 1.6e-174 617.5 848 44.5
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 6.6e-173 612.1 825 45.0
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 1.1e-172 611.3 823 45.0
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 1.1e-172 611.3 685 54.0
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 2.5e-172 610.1 855 44.3
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.3e-172 609.8 711 49.8
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 1.4e-170 604.4 851 44.5
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 3.1e-170 603.2 858 43.5
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 4.0e-170 602.8 656 52.0
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 6.8e-170 602.1 862 44.5
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 9.8e-169 598.2 847 45.0
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 2.4e-167 593.6 938 42.0
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 2.3e-165 587.0 851 43.2
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 4.7e-163 579.3 646 52.3
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.4e-162 577.8 630 53.3
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.3e-162 577.0 646 52.8
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.6e-161 573.5 646 52.0
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 2.2e-160 570.5 834 44.6
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 1.4e-159 567.8 852 43.9
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 2.1e-158 563.9 853 42.4
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 1.0e-157 561.6 850 41.5
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 1.1e-156 558.1 850 42.5
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 1.2e-155 554.7 654 50.9
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 6.8e-154 548.9 823 42.4
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.7e-152 544.3 864 42.6
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 5.4e-151 539.3 833 41.8
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 4.3e-148 529.6 844 40.4
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 1.9e-143 514.2 848 39.6
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 3.9e-141 506.5 635 47.1
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 3.3e-140 503.4 861 38.2
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 6.0e-134 482.6 636 47.6
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.8e-130 471.1 887 38.0
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 8.4e-128 462.2 824 37.9
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 4.2e-127 459.9 842 36.1
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 1.9e-124 451.1 826 38.6
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 7.6e-121 439.1 841 36.5
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 2.2e-120 437.6 573 46.4
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 4.1e-114 416.8 576 45.0
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 3.4e-113 413.7 577 44.5
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 2.2e-107 394.4 780 35.4
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 1.3e-104 385.2 793 37.8
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 4.6e-102 376.7 662 41.8
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 6.5e-96 356.3 441 47.6
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 1.6e-86 325.1 470 40.9
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 5.5e-71 273.5 446 45.1
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 8.0e-62 243.0 826 28.3
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 2.7e-57 228.0 819 30.3
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 3.5e-49 201.1 328 42.4
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 5.2e-45 187.2 312 40.7
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.2e-42 177.9 326 39.6
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 1.9e-39 168.7 261 41.4
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 2.8e-38 164.9 195 46.7
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 8.1e-38 163.3 217 45.2
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.1e-37 162.9 124 62.9
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 1.8e-37 162.2 187 48.7
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 3.8e-35 154.5 301 36.9
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 1.2e-33 149.4 153 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 2.3e-32 145.2 210 43.3
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 6.6e-32 143.7 118 65.3
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.3e-31 141.4 157 51.6
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.4e-29 136.0 239 38.9
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 5.8e-28 130.6 137 54.7
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 3.3e-23 114.8 121 54.5
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.4e-18 99.4 120 45.8
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.2e-18 98.2 109 55.0
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.2e-17 96.3 151 39.1
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 4.6e-17 94.4 115 47.0
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 6.7e-16 90.5 73 61.6
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.1e-15 89.7 139 47.5
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 7.4e-15 87.0 147 42.9
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 1.6e-14 85.9 109 50.5
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 9.0e-13 80.1 51 70.6
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 3.4e-12 78.2 100 45.0
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.4e-12 78.2 75 49.3
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.9e-11 75.1 100 44.0
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 6.0e-09 67.4 165 35.2
CBR_g27932 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-08 65.5 156 29.5
MBI13_g36809_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D240810 3.3e-07 61.6 47 55.3
MBI13_g02371_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D000708 5.6e-07 60.8 65 52.3
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 1.6e-06 59.3 51 54.9


User provided reference genes

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