Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 1.5e-201 706.1 369 100.0
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 8.4e-133 477.6 376 65.4
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.9e-132 476.5 376 65.4
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.2e-132 475.7 376 65.2
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 6.0e-131 471.5 361 66.2
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 5.3e-127 458.4 372 64.0
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 5.3e-127 458.4 373 64.1
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 1.5e-126 456.8 370 64.1
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.7e-125 453.4 372 64.0
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 2.2e-125 453.0 378 63.2
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 5.0e-125 451.8 379 63.3
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 6.5e-125 451.4 377 64.5
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 8.5e-125 451.1 292 75.7
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 3.2e-124 449.1 337 66.5
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 7.9e-123 444.5 377 62.9
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 1.8e-122 443.4 332 66.6
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 3.0e-122 442.6 304 72.0
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.3e-121 439.1 319 69.3
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 1.7e-120 436.8 357 62.2
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 8.2e-120 434.5 342 64.6
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 3.1e-119 432.6 342 64.3
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 7.7e-118 427.9 367 61.9
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 3.2e-116 422.5 382 59.9
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 1.2e-115 420.6 340 62.1
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 2.1e-115 419.9 334 62.9
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 2.7e-115 419.5 338 62.1
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 3.6e-115 419.1 340 63.2
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 4.7e-115 418.7 332 65.7
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 7.9e-115 417.9 305 71.1
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 7.9e-115 417.9 335 64.8
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 2.3e-114 416.4 340 62.4
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 3.9e-114 415.6 347 62.8
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.1e-113 414.1 336 63.7
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 1.5e-113 413.7 330 62.4
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 1.3e-112 410.6 330 61.8
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 1.3e-112 410.6 330 61.8
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.7e-112 410.2 327 65.1
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 2.2e-112 409.8 354 60.7
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 2.2e-112 409.8 364 59.3
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.8e-112 409.5 338 60.4
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 8.2e-112 407.9 371 57.1
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 8.2e-112 407.9 340 60.3
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 1.1e-111 407.5 370 58.6
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.1e-111 407.5 331 61.3
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.4e-111 407.1 327 64.8
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 4.1e-111 405.6 332 62.3
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 4.1e-111 405.6 336 60.4
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 4.1e-111 405.6 327 64.5
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.2e-110 404.1 330 63.9
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 2.6e-110 402.9 375 57.9
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 2.6e-110 402.9 328 63.1
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 2.6e-110 402.9 332 63.3
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 4.5e-110 402.1 326 62.6
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 4.5e-110 402.1 326 62.6
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 2.2e-109 399.8 376 55.1
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 5.0e-109 398.7 307 65.8
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 3.2e-108 396.0 368 56.8
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 3.2e-108 396.0 374 55.3
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 4.2e-108 395.6 310 65.8
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 2.1e-107 393.3 367 56.1
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 4.7e-107 392.1 339 58.1
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 4.7e-107 392.1 343 62.1
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 4.7e-107 392.1 363 59.2
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 8.0e-107 391.3 325 63.1
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.0e-106 391.0 361 57.1
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.8e-106 390.2 364 56.9
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 2.3e-106 389.8 321 62.0
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 3.9e-106 389.0 341 59.2
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 3.9e-106 389.0 367 55.6
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 5.2e-106 388.7 324 60.5
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 1.5e-105 387.1 367 55.3
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 2.0e-105 386.7 345 58.8
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 7.4e-105 384.8 347 59.1
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 6.3e-104 381.7 329 58.7
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 1.8e-103 380.2 283 66.4
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 7.0e-103 378.3 318 61.9
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 1.6e-102 377.1 360 56.1
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 2.2e-101 373.2 347 55.6
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.8e-98 363.6 319 57.4
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.2e-97 360.9 277 63.2
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.7e-96 357.1 355 53.8
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 1.7e-96 357.1 310 60.0
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.1e-95 354.4 387 51.4
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.4e-95 354.0 263 63.5
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.4e-95 353.2 317 54.9
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 1.1e-92 344.4 315 56.5
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 1.8e-90 337.0 339 50.1
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 2.2e-88 330.1 300 62.3
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 6.3e-88 328.6 284 57.0
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 1.8e-87 327.0 292 58.2
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 5.4e-87 325.5 340 52.6
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 7.7e-86 321.6 298 53.7
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 6.1e-83 312.0 235 64.7
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 2.2e-80 303.5 298 52.7
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 5.0e-77 292.4 333 48.0
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 4.4e-73 279.3 336 44.6
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 6.0e-70 268.9 288 47.9
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 7.8e-70 268.5 317 47.6
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 6.6e-69 265.4 313 45.7
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 2.5e-68 263.5 235 55.3
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 9.8e-65 251.5 214 61.7
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 2.7e-62 243.4 333 43.8
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 4.6e-62 242.7 335 44.5
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 1.7e-61 240.7 333 43.8
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 1.8e-58 230.7 258 50.4
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 8.9e-58 228.4 313 43.1
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 2.7e-54 216.9 206 57.3
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 5.1e-53 212.6 222 54.1
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 3.6e-51 206.5 247 49.4
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 5.2e-50 202.6 316 39.2
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 1.3e-48 198.0 172 59.3
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 1.1e-47 194.9 313 38.3
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.6e-46 191.0 214 50.0
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.5e-44 184.5 195 52.3
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 1.2e-41 174.9 113 62.8
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 3.8e-40 169.9 288 36.5
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.8e-40 169.9 166 51.8
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 2.1e-38 164.1 110 64.5
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 6.0e-38 162.5 143 54.5
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 3.1e-34 150.2 125 65.6
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 4.2e-31 139.8 128 56.2
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 4.3e-28 129.8 223 37.2
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 6.5e-24 115.9 67 77.6
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 3.5e-22 110.2 72 66.7
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 4.6e-22 109.8 113 46.9
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.8e-21 107.8 64 73.4
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 3.0e-21 107.1 68 66.2
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.7e-19 100.1 70 62.9
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 4.8e-19 99.8 53 79.2
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.8e-18 97.8 193 32.1
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 3.8e-16 90.1 98 49.0
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 4.6e-14 83.2 52 69.2
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 6.1e-14 82.8 122 36.1
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.4e-10 71.6 50 60.0
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 6.9e-10 69.3 67 50.7
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 7.2e-07 59.3 68 52.9
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 2.7e-06 57.4 68 52.9


User provided reference genes

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