Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 6.1e-217 757.3 409 100.0
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 2.3e-107 393.3 413 55.2
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 2.4e-104 383.3 404 54.2
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 1.1e-101 374.4 404 54.5
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 4.7e-100 369.0 462 49.8
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 1.8e-99 367.1 408 53.7
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 6.3e-97 358.6 411 52.1
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 1.2e-95 354.4 408 51.7
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 7.0e-88 328.6 372 53.0
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 2.0e-87 327.0 413 49.6
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 3.5e-87 326.2 280 60.7
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 5.0e-86 322.4 291 59.5
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 1.0e-83 314.7 306 56.2
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.3e-81 307.8 299 56.9
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.3e-81 307.8 406 48.0
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 6.4e-81 305.4 414 46.6
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 1.9e-80 303.9 369 50.7
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.9e-80 303.9 406 47.5
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 7.0e-80 302.0 415 47.0
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 1.6e-79 300.8 446 44.4
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 2.0e-79 300.4 365 48.5
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 3.0e-78 296.6 365 48.2
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 8.6e-78 295.0 291 56.4
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 4.3e-77 292.7 277 57.8
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 8.0e-76 288.5 411 45.7
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 3.1e-75 286.6 407 45.2
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 7.5e-74 282.0 436 45.2
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 9.8e-74 281.6 231 65.8
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 2.2e-73 280.4 396 45.7
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 2.9e-73 280.0 363 48.8
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 2.4e-72 276.9 375 46.9
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 2.4e-72 276.9 291 54.0
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 9.2e-72 275.0 301 52.8
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 1.1e-69 268.1 422 42.7
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 1.5e-69 267.7 278 54.0
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 1.9e-69 267.3 322 50.6
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 7.3e-69 265.4 341 48.1
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 7.3e-69 265.4 237 59.9
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 2.8e-68 263.5 433 41.3
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 4.7e-68 262.7 436 41.3
EL10Ac6g13115 Beta vulgaris HOM05D007593 ORTHO05D009686 8.9e-67 258.5 407 43.2
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 5.8e-66 255.8 293 50.2
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 3.7e-65 253.1 235 60.0
CANSAT07G0001 Cannabis sativa HOM05D007593 ORTHO05D009686 4.6e-63 246.1 437 41.0
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 6.0e-63 245.7 406 41.4
Thhalv10007877m.g Eutrema salsugineum HOM05D007593 ORTHO05D009686 6.0e-63 245.7 313 48.9
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 7.8e-63 245.4 406 40.9
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 2.3e-62 243.8 453 39.1
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 5.6e-61 239.2 329 44.1
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 9.6e-61 238.4 252 52.8
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 3.6e-60 236.5 407 41.0
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 1.2e-58 231.5 428 40.2
Lj2g0003805 Lotus japonicus HOM05D007593 ORTHO05D009686 2.9e-57 226.9 311 45.3
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 2.9e-57 226.9 303 43.9
ECA233G4970 Erigeron canadensis HOM05D007593 ORTHO05D009686 1.9e-56 224.2 336 39.9
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 4.2e-56 223.0 412 39.6
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 9.3e-56 221.9 418 38.0
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 3.5e-55 219.9 291 45.0
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 7.8e-55 218.8 167 70.1
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 4.8e-52 209.5 167 67.1
BcaC05g24925 Brassica carinata HOM05D007593 ORTHO05D009686 4.0e-51 206.5 433 35.8
Nitab4.5_0000791g0030 Nicotiana tabacum HOM05D007593 ORTHO05D009686 1.5e-50 204.5 405 37.0
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 1.9e-48 197.6 156 67.9
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 3.6e-44 183.3 176 57.4
HanXRQChr12g0371131 Helianthus annuus HOM05D007593 ORTHO05D009686 2.0e-42 177.6 186 52.2
Eucgr.B03393 Eucalyptus grandis HOM05D007593 ORTHO05D009686 1.3e-41 174.9 133 68.4
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 6.4e-41 172.6 167 56.3
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 5.4e-40 169.5 269 42.0
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 8.4e-33 145.6 109 69.7
BcaC05g24887 Brassica carinata HOM05D007593 ORTHO05D009686 1.2e-31 141.7 260 38.5
CAN.G27.56 Capsicum annuum HOM05D007593 ORTHO05D009686 1.0e-30 138.7 355 30.4
DCAR_031078 Daucus carota HOM05D007593 ORTHO05D009686 4.3e-29 133.3 175 41.1
vmacro16309 Vaccinium macrocarpon HOM05D007593 ORTHO05D009686 6.2e-28 129.4 161 46.6
Zm00001eb223170 Zea mays HOM05D007593 ORTHO05D009686 1.3e-25 121.7 176 37.5
Lalb_Chr05g0217441 Lupinus albus HOM05D007593 ORTHO05D009686 2.5e-24 117.5 125 49.6
Lalb_Chr05g0217431 Lupinus albus HOM05D007593 ORTHO05D009686 2.8e-20 104.0 111 55.0
RcHm_v2.0_Chr4g0445121 Rosa chinensis HOM05D007593 ORTHO05D009686 4.5e-18 96.7 178 37.1
TPR.G26746 Trifolium pratense HOM05D007593 ORTHO05D009686 2.2e-17 94.4 312 28.5
CDE07G1947 Ceratophyllum demersum HOM05D007593 ORTHO05D009686 2.5e-16 90.9 138 39.1
AagrBONN_evm.TU.Sc2ySwM_228.4242 Anthoceros agrestis HOM05D007593 ORTHO05D009686 3.0e-14 84.0 185 29.2
Sabra15G0067100 Salix brachista HOM05D007593 ORTHO05D009686 3.0e-14 84.0 73 67.1
Sp1g09040 Schrenkiella parvula HOM05D007593 ORTHO05D009686 8.8e-14 82.4 233 33.0
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 2.5e-13 80.9 277 22.4
TAR629G0814 Trochodendron aralioides HOM05D007593 ORTHO05D009686 3.8e-09 67.0 59 57.6
Ciclev10033560m.g Citrus clementina HOM05D007593 ORTHO05D009686 2.5e-08 64.3 95 38.9
arahy.Tifrunner.gnm1.ann1.YHM9KM Arachis hypogaea HOM05D007593 ORTHO05D009686 5.5e-08 63.2 59 66.1
Peaxi162Scf00209g00948 Petunia axillaris HOM05D007593 ORTHO05D009686 7.2e-08 62.8 136 34.6
CSS0023539 Camellia sinensis var. sinensis HOM05D007593 ORTHO05D009686 2.7e-07 60.8 114 40.4


User provided reference genes

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