Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.1e-206 723.0 359 100.0
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 7.3e-174 614.0 356 82.6
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 8.1e-173 610.5 356 83.4
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.8e-172 609.4 357 84.3
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 5.8e-171 604.4 356 82.6
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 8.4e-170 600.5 359 82.7
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 2.4e-169 599.0 356 79.8
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 4.2e-169 598.2 351 83.2
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 5.4e-169 597.8 356 80.3
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.6e-168 596.3 353 81.9
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 2.7e-168 595.5 356 83.7
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 2.7e-168 595.5 356 78.9
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 4.6e-168 594.7 356 82.0
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.0e-167 593.6 352 81.5
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.3e-167 593.2 357 79.3
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.8e-167 592.8 370 80.0
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.8e-167 592.8 356 81.5
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.3e-167 592.4 356 81.5
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.1e-166 590.1 353 81.0
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.5e-166 589.7 353 81.0
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.5e-166 589.7 356 78.9
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.9e-166 589.3 347 83.6
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 4.3e-166 588.2 357 79.6
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.3e-165 586.6 357 79.3
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 3.1e-164 582.0 357 80.4
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 5.3e-164 581.3 353 81.9
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 9.0e-164 580.5 358 80.4
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 9.0e-164 580.5 352 82.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.5e-163 579.7 356 79.2
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 3.4e-163 578.6 355 81.4
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.4e-163 578.6 355 81.1
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.4e-163 578.6 352 81.8
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 3.8e-162 575.1 356 78.1
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 1.4e-161 573.2 353 79.6
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.4e-161 573.2 357 78.7
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.9e-161 572.8 354 79.1
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.9e-161 572.8 355 80.0
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 5.5e-161 571.2 359 79.1
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.8e-159 566.2 351 79.5
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 2.3e-159 565.8 349 79.4
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 5.1e-159 564.7 346 79.5
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 8.7e-159 563.9 356 79.5
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 8.7e-159 563.9 349 79.4
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.5e-158 563.1 351 78.6
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 5.6e-158 561.2 350 80.0
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.3e-157 560.1 356 78.1
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 1.6e-157 559.7 349 77.7
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.6e-157 559.7 355 77.7
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.6e-157 559.7 352 79.5
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.6e-157 559.7 352 79.3
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 4.8e-157 558.1 349 77.7
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 4.8e-157 558.1 349 77.7
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 4.8e-157 558.1 349 77.7
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 6.2e-157 557.8 349 77.7
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 8.2e-157 557.4 349 77.9
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 2.4e-156 555.8 349 77.4
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 2.4e-156 555.8 358 74.6
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.1e-156 555.4 356 77.5
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 5.3e-156 554.7 353 77.6
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 5.3e-156 554.7 357 77.3
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 6.9e-156 554.3 357 76.5
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 2.0e-155 552.7 358 74.3
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 7.6e-155 550.8 353 76.2
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.0e-154 550.4 355 74.6
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.9e-154 548.9 378 72.8
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 6.5e-154 547.7 345 78.0
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.1e-153 547.0 350 76.3
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 1.1e-153 547.0 362 75.4
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 2.5e-153 545.8 373 72.7
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 5.5e-153 544.7 350 76.3
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.2e-152 543.5 354 76.0
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 3.5e-152 542.0 356 75.8
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 1.8e-151 539.7 381 71.9
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 8.7e-151 537.3 355 74.9
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 1.5e-150 536.6 359 73.3
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 1.9e-150 536.2 356 74.7
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 8.2e-149 530.8 303 82.8
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 2.0e-147 526.2 348 71.8
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 5.9e-147 524.6 346 74.6
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.7e-146 523.1 355 73.2
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 1.9e-145 519.6 356 72.2
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 4.2e-145 518.5 351 74.4
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.6e-144 515.4 351 74.4
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 4.6e-144 515.0 349 73.6
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 6.1e-144 514.6 344 72.1
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 6.1e-144 514.6 378 69.8
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 1.8e-143 513.1 347 70.6
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 5.1e-143 511.5 341 76.5
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 1.5e-142 510.0 383 67.6
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 7.4e-142 507.7 347 75.2
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 3.1e-140 502.3 304 77.3
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 5.3e-140 501.5 301 83.7
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.0e-138 497.3 347 73.8
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 2.2e-138 496.1 302 83.1
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 6.5e-138 494.6 347 72.9
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.0e-135 487.3 396 64.1
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 4.4e-134 481.9 328 75.0
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 2.8e-133 479.2 302 75.5
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 3.7e-133 478.8 359 69.1
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 3.1e-132 475.7 351 69.8
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 7.0e-132 474.6 343 67.3
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.6e-131 472.6 310 74.8
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 2.9e-130 469.2 330 71.5
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 7.2e-129 464.5 326 74.2
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 2.3e-127 459.5 283 77.0
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 5.2e-127 458.4 344 69.5
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 4.8e-125 451.8 359 65.7
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.0e-122 444.1 293 74.4
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.3e-122 443.7 254 83.1
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 2.1e-120 436.4 315 70.8
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 8.0e-120 434.5 254 80.7
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.8e-119 433.3 296 71.6
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 2.2e-117 426.4 301 71.1
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 9.1e-116 421.0 298 70.5
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 5.9e-115 418.3 265 79.6
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 9.4e-113 411.0 250 83.2
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 1.8e-111 406.8 387 59.4
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.5e-110 403.7 257 78.2
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 1.2e-107 394.0 236 79.2
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 6.6e-106 388.3 254 78.0
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.3e-105 386.0 352 54.3
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.2e-104 384.0 342 55.3
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.4e-103 380.6 257 76.7
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 8.3e-101 371.3 309 64.4
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 5.9e-99 365.2 349 53.0
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.0e-98 364.4 331 55.9
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 2.8e-96 356.3 236 78.4
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.3e-90 337.4 257 67.3
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.2e-88 330.9 226 73.5
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.6e-88 329.3 232 73.7
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.8e-87 327.0 190 81.1
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 5.8e-86 322.0 282 53.5
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.1e-84 317.8 195 77.4
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.2e-80 304.3 325 47.1
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.1e-66 255.8 371 43.9
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 2.6e-62 243.4 187 65.8
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.9e-61 240.0 162 74.1
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 5.4e-52 209.1 180 65.6
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 2.3e-34 150.6 98 72.4
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 5.9e-30 136.0 73 80.8
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 1.0e-29 135.2 74 82.4
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-29 134.8 73 80.8
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 1.3e-29 134.8 73 80.8
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 2.9e-29 133.7 73 82.2
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 6.5e-29 132.5 136 54.4
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 1.0e-26 125.2 61 90.2
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 1.0e-21 108.6 95 61.1
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 1.5e-09 68.2 55 65.5
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 8.2e-08 62.4 40 75.0


User provided reference genes

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