Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 6.7e-54 213.8 108 100.0
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.4e-32 142.9 108 68.5
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.9e-32 142.5 108 67.6
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 4.1e-27 124.8 107 60.7
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 5.3e-27 124.4 107 62.6
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 6.9e-27 124.0 108 62.0
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 6.9e-27 124.0 104 61.5
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 1.2e-26 123.2 107 57.0
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 2.0e-26 122.5 107 59.8
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 5.9e-26 120.9 107 59.8
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 1.0e-25 120.2 107 57.9
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 1.3e-25 119.8 107 57.9
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 1.3e-25 119.8 107 60.7
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 2.2e-25 119.0 107 60.7
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 2.2e-25 119.0 107 57.0
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 6.5e-25 117.5 107 55.1
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 8.5e-25 117.1 107 55.1
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 8.5e-25 117.1 107 56.1
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 1.1e-24 116.7 98 62.2
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 1.4e-24 116.3 107 54.2
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 1.9e-24 115.9 106 61.3
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 1.9e-24 115.9 107 61.7
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 1.9e-24 115.9 107 56.1
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 4.2e-24 114.8 102 60.8
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 4.2e-24 114.8 107 57.0
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 4.2e-24 114.8 107 57.9
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 5.5e-24 114.4 108 53.7
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 7.2e-24 114.0 150 47.3
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 7.2e-24 114.0 107 57.9
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 7.2e-24 114.0 107 57.0
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 9.4e-24 113.6 107 55.1
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 9.4e-24 113.6 106 55.7
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 1.2e-23 113.2 107 55.1
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 1.2e-23 113.2 107 55.1
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.2e-23 113.2 110 57.3
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 1.2e-23 113.2 108 55.6
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 1.2e-23 113.2 108 55.6
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 1.6e-23 112.8 107 54.2
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 1.6e-23 112.8 107 55.1
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 1.6e-23 112.8 110 58.2
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 2.1e-23 112.5 107 55.1
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 2.7e-23 112.1 106 54.7
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 3.6e-23 111.7 108 56.5
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 3.6e-23 111.7 108 55.6
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 3.6e-23 111.7 107 53.3
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 3.6e-23 111.7 109 52.3
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 4.7e-23 111.3 107 55.1
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 6.1e-23 110.9 106 57.5
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 6.1e-23 110.9 113 56.6
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 6.1e-23 110.9 110 57.3
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 7.9e-23 110.5 107 54.2
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 7.9e-23 110.5 107 54.2
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 7.9e-23 110.5 108 57.4
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 1.0e-22 110.2 104 57.7
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 1.0e-22 110.2 107 51.4
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.4e-22 109.8 110 56.4
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 1.4e-22 109.8 108 54.6
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 1.4e-22 109.8 113 55.8
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.4e-22 109.8 104 56.7
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 1.8e-22 109.4 107 53.3
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 5.1e-22 107.8 107 54.2
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 5.1e-22 107.8 107 58.9
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 6.7e-22 107.5 104 56.7
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 6.7e-22 107.5 107 55.1
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 6.7e-22 107.5 107 57.0
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 8.8e-22 107.1 106 52.8
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 1.5e-21 106.3 110 56.4
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.5e-21 106.3 110 56.4
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 5.7e-21 104.4 124 50.0
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 5.7e-21 104.4 107 50.5
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 1.3e-20 103.2 88 65.9
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.7e-20 102.8 109 54.1
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 1.7e-20 102.8 109 55.0
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 1.7e-20 102.8 107 52.3
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 3.7e-20 101.7 104 51.0
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 4.8e-20 101.3 109 54.1
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 4.8e-20 101.3 110 52.7
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 6.3e-20 100.9 88 64.8
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 1.1e-19 100.1 107 48.6
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 1.8e-19 99.4 94 56.4
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 2.4e-19 99.0 107 48.6
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 4.1e-19 98.2 108 50.0
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 6.9e-19 97.4 94 55.3
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 9.1e-19 97.1 107 44.9
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 9.1e-19 97.1 104 51.9
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 1.2e-18 96.7 107 47.7
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 1.2e-18 96.7 107 47.7
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 2.6e-18 95.5 107 46.7
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 3.4e-18 95.1 107 46.7
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 7.7e-18 94.0 107 46.7
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 7.7e-18 94.0 107 45.8
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 1.0e-17 93.6 107 44.9
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 1.0e-17 93.6 104 51.9
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 1.3e-17 93.2 98 53.1
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 1.3e-17 93.2 62 75.8
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 1.3e-17 93.2 104 44.2
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 2.2e-17 92.4 104 48.1
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 6.5e-17 90.9 106 47.2
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 1.1e-16 90.1 104 47.1
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 1.4e-16 89.7 49 81.6
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 1.9e-16 89.4 104 48.1
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.5e-16 89.0 107 46.7
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 3.2e-16 88.6 92 54.3
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 3.2e-16 88.6 110 52.7
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 7.2e-16 87.4 107 44.9
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 7.2e-16 87.4 50 82.0
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 2.1e-15 85.9 69 60.9
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.3e-14 82.4 107 45.8
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 8.8e-14 80.5 46 80.4
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.0e-13 79.3 49 75.5
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 2.2e-12 75.9 96 43.8
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 3.7e-12 75.1 96 42.7
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 4.8e-12 74.7 114 43.0
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 6.3e-12 74.3 50 64.0
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.8e-11 72.8 108 44.4
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 3.1e-11 72.0 104 40.4
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 7.0e-11 70.9 105 41.0
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 9.1e-11 70.5 107 39.3
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 2.6e-10 68.9 115 40.0
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 7.7e-10 67.4 68 51.5
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 2.2e-09 65.9 55 61.8
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 2.2e-09 65.9 43 62.8
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 1.5e-08 63.2 43 60.5
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 1.5e-08 63.2 56 57.1
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 1.9e-08 62.8 48 62.5
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 2.5e-08 62.4 68 50.0
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 2.5e-08 62.4 68 50.0
Actinidia21980 Actinidia chinensis HOM05D001011 ORTHO05D005776 4.2e-08 61.6 80 48.8
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 2.7e-07 58.9 38 73.7
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 6.1e-07 57.8 38 65.8
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 6.1e-07 57.8 38 65.8
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 8.0e-07 57.4 41 65.9
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 1.4e-06 56.6 40 60.0
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 63.2
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 3.0e-06 55.5 38 65.8


User provided reference genes

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