Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 2.6e-203 711.8 358 100.0
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 1.6e-115 420.2 338 62.1
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 4.5e-115 418.7 320 62.5
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 1.0e-114 417.5 335 61.2
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 2.2e-114 416.4 325 63.7
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 2.9e-114 416.0 322 63.4
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 1.8e-111 406.8 319 64.3
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 5.2e-111 405.2 322 61.2
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 2.6e-110 402.9 318 61.0
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 2.6e-110 402.9 337 60.5
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 4.4e-110 402.1 335 59.7
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.3e-109 400.6 337 60.2
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 3.7e-109 399.1 327 63.0
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 1.1e-108 397.5 324 62.3
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 1.8e-108 396.7 316 63.3
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 3.1e-108 396.0 333 57.7
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 5.9e-107 391.7 328 60.7
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 5.9e-107 391.7 368 56.0
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 2.2e-106 389.8 324 61.4
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.9e-106 389.4 330 57.9
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 2.9e-106 389.4 313 61.3
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 1.1e-105 387.5 338 57.7
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 7.2e-105 384.8 352 58.0
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 2.7e-104 382.9 322 60.6
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 6.1e-104 381.7 330 57.9
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 1.0e-103 380.9 376 53.2
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.8e-103 380.2 335 57.3
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 1.5e-102 377.1 355 55.8
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 2.6e-102 376.3 347 57.1
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 2.6e-102 376.3 329 59.3
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 2.6e-102 376.3 344 56.4
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 2.6e-102 376.3 349 55.3
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 2.6e-102 376.3 321 60.4
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.4e-102 375.9 323 58.5
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 9.8e-102 374.4 338 57.1
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 9.8e-102 374.4 326 58.9
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 1.3e-101 374.0 346 56.4
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 1.7e-101 373.6 327 58.7
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 6.3e-101 371.7 347 55.9
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.1e-100 370.9 326 57.4
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 1.4e-100 370.5 341 56.9
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 2.4e-100 369.8 323 58.2
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 4.1e-100 369.0 324 58.0
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 9.1e-100 367.9 323 57.0
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 1.2e-99 367.5 320 55.6
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 1.6e-99 367.1 340 56.5
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.6e-99 367.1 320 59.7
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 2.0e-99 366.7 322 59.6
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 2.7e-99 366.3 325 57.8
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 3.5e-99 365.9 321 57.9
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 7.7e-99 364.8 318 57.5
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.3e-98 364.0 339 55.2
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.7e-98 363.6 320 59.1
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 2.3e-98 363.2 345 55.4
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 3.8e-98 362.5 321 57.3
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 3.8e-98 362.5 356 54.2
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 6.5e-98 361.7 276 67.0
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.5e-97 360.5 329 56.2
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 6.1e-96 355.1 322 56.5
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 6.1e-96 355.1 322 56.5
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 6.1e-96 355.1 331 55.3
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 6.1e-96 355.1 320 57.2
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 4.0e-95 352.4 322 54.3
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 6.3e-93 345.1 317 55.2
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.1e-92 344.4 280 59.3
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 3.1e-92 342.8 332 55.1
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.1e-89 334.3 322 55.3
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 1.1e-89 334.3 321 54.2
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 5.6e-89 332.0 327 52.6
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 1.2e-88 330.9 342 51.5
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 1.6e-88 330.5 336 52.4
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.4e-87 327.4 320 54.1
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 6.8e-87 325.1 321 52.6
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 1.2e-86 324.3 323 50.5
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 5.8e-86 322.0 321 53.0
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 7.5e-86 321.6 324 50.6
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 7.5e-86 321.6 345 52.5
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 7.5e-86 321.6 333 51.7
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 9.8e-86 321.2 323 53.3
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 9.8e-86 321.2 347 50.1
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 9.8e-86 321.2 318 52.2
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 2.2e-85 320.1 294 55.8
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 1.4e-84 317.4 318 52.5
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 1.6e-83 313.9 328 52.4
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 1.6e-83 313.9 334 51.5
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 7.8e-83 311.6 348 47.7
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.9e-81 307.0 349 49.3
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 2.5e-81 306.6 348 49.4
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 1.2e-80 304.3 329 50.5
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 6.8e-79 298.5 240 61.2
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 7.5e-78 295.0 330 48.8
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 4.1e-76 289.3 216 64.8
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 2.1e-75 287.0 349 46.1
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 5.0e-74 282.3 249 56.2
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 3.3e-73 279.6 282 53.5
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.2e-72 277.7 266 56.8
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.6e-72 277.3 297 49.2
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 4.6e-67 259.2 379 41.7
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 1.8e-63 247.3 347 42.4
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 1.2e-62 244.6 221 57.5
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 4.4e-62 242.7 335 43.0
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 2.2e-61 240.4 353 38.0
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 3.9e-58 229.6 184 58.2
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.4e-55 221.1 325 38.8
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 7.1e-52 208.8 304 41.4
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.3e-48 198.0 328 39.0
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 3.3e-41 173.3 229 43.7
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 1.9e-36 157.5 143 59.4
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 1.0e-34 151.8 181 45.3
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 4.8e-32 142.9 204 41.2
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 1.6e-24 117.9 148 43.2
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.6e-22 110.5 113 57.5
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 2.6e-22 110.5 83 63.9
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 8.5e-21 105.5 88 56.8
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 3.3e-09 67.0 200 27.0
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 3.3e-09 67.0 146 33.6
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 3.3e-09 67.0 203 25.1
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 7.4e-09 65.9 202 24.8
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 9.7e-09 65.5 168 25.0
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 1.3e-08 65.1 242 23.1
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 2.2e-08 64.3 82 43.9
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 8.2e-08 62.4 200 28.5
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 8.2e-08 62.4 167 24.6
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 1.1e-07 62.0 193 26.4
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 1.4e-07 61.6 151 26.5
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.4e-07 61.6 167 24.6
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 1.4e-07 61.6 200 28.0
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 2.4e-07 60.8 186 30.6
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 2.4e-07 60.8 192 27.1
PSO782G0075 Papaver somniferum HOM05D001602 ORTHO05D001470 2.4e-07 60.8 159 34.0
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 2.4e-07 60.8 213 28.2
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 3.1e-07 60.5 193 25.9
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 3.1e-07 60.5 148 27.7
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 3.1e-07 60.5 150 29.3
TAR636G0341 Trochodendron aralioides HOM05D000219 ORTHO05D000226 3.1e-07 60.5 165 32.7
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 4.1e-07 60.1 208 27.9
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 5.3e-07 59.7 211 27.0
Cpa.g.sc1626.1 Carica papaya HOM05D006908 ORTHO05D008662 5.3e-07 59.7 51 54.9
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 5.3e-07 59.7 179 29.6
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 5.3e-07 59.7 146 32.2
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 7.0e-07 59.3 177 28.8
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 7.0e-07 59.3 193 25.9
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 7.0e-07 59.3 69 46.4
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 7.0e-07 59.3 197 28.9
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 9.1e-07 58.9 154 26.6
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 9.1e-07 58.9 177 28.2
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 9.1e-07 58.9 177 28.2
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 9.1e-07 58.9 148 27.0
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 9.1e-07 58.9 184 28.3
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 1.2e-06 58.5 186 27.4
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 1.2e-06 58.5 100 29.0
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.2e-06 58.5 146 30.8
TWI81G0762 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 1.2e-06 58.5 175 30.9
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 1.5e-06 58.2 264 25.8
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 1.5e-06 58.2 197 26.9
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 2.0e-06 57.8 132 26.5
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 2.0e-06 57.8 109 26.6
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 2.0e-06 57.8 193 28.0
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 2.0e-06 57.8 210 27.6
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 2.0e-06 57.8 200 27.5
PGR044G0265 Punica granatum HOM05D001602 ORTHO05D001470 2.6e-06 57.4 162 30.2
Nn1g00671 Nelumbo nucifera HOM05D001602 ORTHO05D001470 3.5e-06 57.0 146 33.6
THA.LOC104811422 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 3.5e-06 57.0 162 31.5
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 3.5e-06 57.0 109 26.6
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 4.5e-06 56.6 195 28.2
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 4.5e-06 56.6 216 26.4
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 4.5e-06 56.6 141 28.4
COL.COLO4_17122 Corchorus olitorius HOM05D001602 ORTHO05D001470 4.5e-06 56.6 180 32.2
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 4.5e-06 56.6 142 25.4
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 4.5e-06 56.6 174 28.2
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 4.5e-06 56.6 163 27.0
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 4.5e-06 56.6 156 26.9
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 4.5e-06 56.6 186 27.4
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 5.9e-06 56.2 94 36.2
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 5.9e-06 56.2 159 22.0
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 5.9e-06 56.2 175 30.9
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 5.9e-06 56.2 195 27.7
Cpa.g.sc41.11 Carica papaya HOM05D006908 ORTHO05D008662 7.7e-06 55.8 46 47.8
DCAR_005441 Daucus carota HOM05D001602 ORTHO05D001470 7.7e-06 55.8 168 32.1


User provided reference genes

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