Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 2.4e-136 488.8 243 100.0
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 1.7e-89 333.2 292 64.7
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 1.1e-67 260.8 296 50.0
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 5.9e-66 255.0 300 51.7
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 3.6e-63 245.7 297 48.5
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 4.6e-63 245.4 307 47.2
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 3.0e-62 242.7 291 46.7
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 3.0e-62 242.7 302 46.7
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 2.5e-61 239.6 299 46.2
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 2.5e-61 239.6 297 46.1
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 3.3e-61 239.2 297 46.1
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 4.3e-61 238.8 308 45.8
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 5.7e-61 238.4 305 44.9
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 1.3e-60 237.3 300 46.0
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.8e-60 236.1 305 44.3
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 6.3e-60 235.0 305 44.6
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 5.3e-59 231.9 302 45.0
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 6.9e-59 231.5 288 46.2
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 1.2e-58 230.7 295 45.1
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.5e-58 230.3 295 45.1
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 5.9e-58 228.4 307 44.6
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 7.7e-58 228.0 295 44.7
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 7.7e-58 228.0 302 45.4
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 1.0e-57 227.6 309 41.7
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 1.3e-57 227.3 293 44.7
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 1.3e-57 227.3 289 44.6
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 1.7e-57 226.9 300 45.0
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 1.7e-57 226.9 304 44.7
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.2e-57 226.5 315 42.9
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 3.8e-57 225.7 290 43.8
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 3.8e-57 225.7 299 43.8
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 5.0e-57 225.3 295 43.7
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 5.0e-57 225.3 301 44.2
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 6.5e-57 224.9 299 45.5
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 1.1e-56 224.2 303 44.6
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 1.4e-56 223.8 293 44.4
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 1.4e-56 223.8 293 45.4
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 1.9e-56 223.4 296 46.3
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 4.2e-56 222.2 295 45.1
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 4.2e-56 222.2 288 44.8
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 1.2e-55 220.7 312 40.7
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.2e-55 220.7 290 44.8
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.6e-55 220.3 291 43.0
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 2.1e-55 219.9 297 43.4
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 2.7e-55 219.5 299 43.8
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 3.6e-55 219.2 289 43.3
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 3.6e-55 219.2 299 43.1
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 4.7e-55 218.8 279 46.2
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 7.9e-55 218.0 304 42.8
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.0e-54 217.6 291 41.9
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 1.8e-54 216.9 294 43.9
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 2.3e-54 216.5 290 43.4
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 3.9e-54 215.7 289 43.6
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 3.9e-54 215.7 296 42.2
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 5.1e-54 215.3 299 43.8
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 1.1e-53 214.2 346 39.0
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.5e-53 213.8 294 43.9
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 1.5e-53 213.8 294 42.5
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 2.0e-53 213.4 303 42.9
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 2.0e-53 213.4 319 42.3
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 3.3e-53 212.6 293 42.7
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 7.4e-53 211.5 288 43.8
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 7.4e-53 211.5 288 43.8
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 7.4e-53 211.5 288 43.8
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 9.7e-53 211.1 289 43.3
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.3e-52 210.7 293 42.3
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 1.3e-52 210.7 300 43.3
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 1.3e-52 210.7 298 44.0
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.8e-52 209.5 293 42.3
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 2.8e-52 209.5 297 44.1
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 2.8e-52 209.5 292 42.1
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 6.3e-52 208.4 288 43.4
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 6.3e-52 208.4 288 42.4
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 6.3e-52 208.4 292 42.1
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 1.4e-51 207.2 296 42.2
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 1.4e-51 207.2 296 42.2
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 1.4e-51 207.2 316 41.8
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 2.4e-51 206.5 296 43.2
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 3.1e-51 206.1 295 40.7
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 4.1e-51 205.7 292 42.8
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 7.0e-51 204.9 296 41.9
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 7.0e-51 204.9 296 41.9
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.5e-50 203.8 297 39.7
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 3.5e-50 202.6 297 39.7
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 4.5e-50 202.2 294 42.9
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 4.5e-50 202.2 300 43.3
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 4.5e-50 202.2 293 41.0
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.0e-49 201.1 297 42.4
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 2.9e-49 199.5 291 41.2
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.1e-48 197.6 298 38.9
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 7.2e-48 194.9 303 40.3
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 1.6e-47 193.7 285 42.1
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 1.6e-47 193.7 295 37.6
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 4.7e-47 192.2 278 41.7
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 8.0e-47 191.4 300 40.7
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 1.3e-44 184.1 308 39.3
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 8.2e-44 181.4 298 39.9
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 4.1e-43 179.1 272 41.2
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 4.1e-43 179.1 296 41.9
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 2.9e-41 172.9 318 36.8
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 1.9e-40 170.2 246 41.5
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 3.2e-40 169.5 300 37.3
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 3.2e-40 169.5 300 37.3
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.2e-39 167.5 297 37.0
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 8.8e-38 161.4 221 45.2
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 8.8e-38 161.4 221 45.2
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 2.5e-32 143.3 292 32.2
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 3.6e-31 139.4 226 39.4
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 4.0e-30 136.0 303 32.7
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 5.7e-29 132.1 295 32.2
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 7.5e-29 131.7 221 38.5
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 1.7e-28 130.6 112 59.8
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 4.1e-27 125.9 217 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 5.9e-26 122.1 250 33.6
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 3.8e-25 119.4 115 52.2
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 1.1e-24 117.9 108 56.5
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 4.7e-23 112.5 224 33.9
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.8e-22 110.5 112 50.9
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 4.0e-22 109.4 112 47.3
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 2.0e-21 107.1 112 43.8
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 3.4e-21 106.3 114 47.4
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 8.6e-17 91.7 71 63.4
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 4.3e-16 89.4 76 64.5
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 7.3e-16 88.6 71 59.2
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 6.1e-15 85.5 70 61.4
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 6.1e-15 85.5 70 61.4
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 6.8e-14 82.0 261 28.4
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 3.7e-12 76.3 86 44.2
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 8.3e-12 75.1 271 24.0
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.2e-10 71.2 72 45.8
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 2.0e-10 70.5 89 47.2
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 7.8e-10 68.6 57 50.9
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 3.6e-07 59.7 105 32.4
Glyma.01G043400 Glycine max HOM05D001741 ORTHO05D002196 1.4e-06 57.8 107 34.6
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 6.8e-06 55.5 50 60.0
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 6.8e-06 55.5 109 33.0


User provided reference genes

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