Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 4.4e-222 774.2 376 100.0
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 5.5e-156 554.7 379 72.0
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.2e-155 553.5 384 71.4
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 8.0e-155 550.8 386 70.7
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.2e-153 547.0 385 69.6
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 3.7e-152 542.0 362 70.4
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 8.3e-152 540.8 385 70.6
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 5.9e-150 534.6 380 69.2
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.7e-149 533.1 390 69.0
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 5.0e-149 531.6 373 68.4
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.1e-148 530.4 346 74.0
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.5e-148 530.0 386 69.9
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.5e-148 530.0 374 71.1
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 1.9e-148 529.6 366 69.1
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.5e-148 529.3 365 68.5
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 4.2e-148 528.5 353 71.1
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 5.5e-148 528.1 366 68.6
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.5e-148 528.1 366 68.3
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 7.2e-148 527.7 364 70.3
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 7.2e-148 527.7 367 67.6
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 9.5e-148 527.3 382 68.3
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 9.5e-148 527.3 367 70.8
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.2e-147 526.9 366 68.6
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.2e-147 526.9 366 68.0
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.2e-147 526.9 366 68.6
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 2.1e-147 526.2 365 68.8
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 1.4e-146 523.5 383 67.9
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.8e-146 523.1 339 72.3
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 2.3e-146 522.7 367 67.0
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 3.0e-146 522.3 365 67.7
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 5.2e-146 521.5 365 68.2
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 6.8e-146 521.2 363 69.7
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.5e-145 520.0 353 72.0
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 2.6e-145 519.2 373 67.3
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 9.8e-145 517.3 363 68.6
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.3e-144 516.9 383 67.4
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 8.3e-144 514.2 380 66.1
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 1.4e-143 513.5 387 65.1
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 2.4e-143 512.7 343 72.0
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 5.4e-143 511.5 352 69.9
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.0e-143 511.1 387 64.9
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.2e-142 510.4 375 65.6
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.6e-142 510.0 382 65.4
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.6e-142 510.0 356 70.2
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 5.9e-142 508.1 365 68.2
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 7.8e-142 507.7 379 66.2
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 6.6e-141 504.6 354 69.5
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 8.6e-141 504.2 378 65.9
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 1.1e-140 503.8 352 68.8
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 5.6e-140 501.5 379 66.0
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 7.3e-140 501.1 345 69.9
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.2e-139 500.4 374 66.3
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.7e-139 498.4 398 62.1
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.7e-139 498.4 339 70.5
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.3e-138 496.1 381 64.6
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.1e-138 495.7 388 63.7
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 3.1e-138 495.7 343 70.0
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 3.1e-138 495.7 437 59.7
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 4.0e-138 495.4 370 67.6
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.2e-137 493.8 378 66.7
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 1.2e-137 493.8 352 66.8
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.6e-137 492.7 376 66.2
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 4.4e-137 491.9 348 67.8
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 7.5e-137 491.1 352 66.5
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.3e-136 490.3 389 63.0
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.7e-136 490.0 349 67.0
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.7e-136 490.0 365 65.5
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.2e-136 489.6 378 66.4
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.2e-136 489.6 384 63.0
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.9e-136 489.2 382 66.2
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 5.4e-135 485.0 345 68.4
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.0e-134 483.0 369 64.2
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.7e-134 482.6 384 63.5
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 4.6e-134 481.9 354 66.7
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 6.0e-134 481.5 360 65.8
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.3e-133 480.3 360 64.4
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 2.3e-133 479.6 343 65.3
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 6.6e-133 478.0 341 68.9
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 2.5e-132 476.1 346 67.1
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.3e-132 475.7 381 61.7
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.3e-132 475.7 349 65.0
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.3e-132 475.3 360 63.9
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 4.3e-132 475.3 380 60.8
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.1e-131 473.0 385 60.8
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 3.1e-130 469.2 356 63.8
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 4.0e-130 468.8 340 64.7
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 1.2e-129 467.2 384 62.8
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.5e-129 466.8 346 64.5
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.4e-129 465.3 403 58.3
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 9.8e-129 464.2 354 62.4
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.7e-128 463.4 402 60.2
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 8.3e-128 461.1 386 60.4
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.9e-127 459.9 426 54.0
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 7.1e-127 458.0 361 62.0
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 9.2e-127 457.6 373 60.9
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 4.6e-126 455.3 300 70.0
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.3e-124 449.1 353 61.8
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.5e-124 447.6 405 56.8
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 3.6e-123 445.7 400 57.0
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 3.6e-123 445.7 366 58.5
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 8.1e-123 444.5 377 62.6
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 4.0e-122 442.2 354 60.7
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.4e-121 439.1 341 61.3
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 1.2e-118 430.6 386 56.2
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 5.1e-117 425.2 330 65.2
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 8.6e-117 424.5 352 58.8
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-116 424.1 403 54.8
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.6e-116 421.8 356 61.0
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.1e-115 417.9 401 54.1
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.1e-114 417.5 360 58.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.1e-114 417.5 355 58.3
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 4.0e-114 415.6 368 57.3
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 1.2e-113 414.1 392 53.8
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.0e-113 413.3 355 57.5
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 7.6e-113 411.4 308 67.9
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 5.4e-111 405.2 353 60.3
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.3e-109 399.8 323 59.8
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 5.1e-109 398.7 397 54.2
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.6e-107 392.5 509 44.8
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.8e-106 390.2 373 54.4
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 4.0e-106 389.0 545 42.2
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.6e-105 386.3 273 69.2
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 9.9e-105 384.4 270 71.1
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-104 384.0 390 53.8
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 2.4e-103 379.8 267 69.7
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.0e-101 374.4 349 56.2
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.3e-98 362.1 270 63.7
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 3.4e-97 359.4 371 49.3
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.6e-91 340.5 378 48.9
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 1.6e-91 340.5 259 64.1
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.4e-90 336.7 361 45.7
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.4e-89 332.8 295 60.0
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 1.3e-88 330.9 243 67.1
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.7e-88 330.5 352 51.1
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 2.9e-88 329.7 229 64.6
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 2.1e-83 313.5 342 48.5
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 3.0e-77 293.1 189 73.0
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.2e-70 271.2 519 35.1
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.1e-70 270.4 282 53.2
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 6.1e-70 268.9 351 44.4
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.9e-66 255.4 348 44.3
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 3.8e-64 249.6 200 63.5
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.3e-56 224.6 292 42.8
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.7e-51 207.6 190 50.0
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.2e-49 201.4 261 43.7
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 5.9e-41 172.6 370 31.9
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 7.7e-41 172.2 307 35.5
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 1.9e-39 167.5 329 31.9
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 4.2e-39 166.4 122 64.8
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.4e-37 161.4 175 52.0
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 6.1e-30 136.0 93 67.7
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.3e-24 117.5 117 50.4
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 5.2e-21 106.3 81 65.4
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 9.2e-18 95.5 63 68.3
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 3.0e-16 90.5 48 85.4
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 5.0e-16 89.7 54 74.1
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.2e-11 74.3 43 79.1
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.4e-10 70.9 130 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 2.5e-07 60.8 60 45.0
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 4.3e-07 60.1 53 54.7


User provided reference genes

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