Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 4.4e-145 518.1 286 100.0
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 3.5e-126 455.3 286 86.7
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 5.2e-122 441.4 286 84.6
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 6.8e-122 441.0 286 85.3
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.2e-121 440.3 285 84.6
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.5e-121 439.9 285 84.6
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 3.4e-121 438.7 238 86.6
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 9.8e-121 437.2 285 83.9
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.7e-120 436.4 286 85.0
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.7e-120 436.4 286 85.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.9e-120 435.6 285 84.6
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.7e-120 435.3 286 83.6
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.1e-119 433.7 286 82.9
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.4e-119 433.3 286 83.9
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 3.2e-119 432.2 286 82.9
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 4.1e-119 431.8 296 81.4
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 5.4e-119 431.4 286 82.9
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 5.4e-119 431.4 285 85.6
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 7.0e-119 431.0 286 82.9
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.2e-118 430.3 288 83.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.2e-118 430.3 285 82.5
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.7e-118 429.1 285 83.5
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 3.5e-118 428.7 286 82.5
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 3.5e-118 428.7 285 83.5
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 3.5e-118 428.7 286 83.6
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.3e-117 426.8 288 85.1
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 3.9e-117 425.2 238 85.7
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.1e-116 423.7 286 83.2
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.1e-116 423.7 285 82.1
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 2.5e-116 422.5 286 81.8
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.3e-116 422.2 285 81.8
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.3e-116 422.2 238 82.4
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.3e-116 422.2 286 83.9
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 5.6e-116 421.4 221 88.7
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.6e-115 419.9 285 80.4
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 4.7e-115 418.3 285 80.7
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 4.7e-115 418.3 286 81.1
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 8.0e-115 417.5 285 80.0
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.0e-114 417.2 306 77.8
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 8.9e-114 414.1 286 81.8
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.5e-113 413.3 286 82.9
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.5e-113 413.3 285 80.0
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.7e-112 409.8 287 81.2
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.9e-111 406.4 289 81.0
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.6e-110 403.3 286 78.3
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 6.0e-110 401.4 285 79.6
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 6.0e-110 401.4 267 82.8
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 6.0e-110 401.4 238 79.4
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.3e-109 400.2 285 80.4
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.3e-109 399.4 285 80.0
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 8.6e-109 397.5 286 77.3
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.9e-108 396.4 231 81.0
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.6e-108 394.8 236 78.0
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.2e-107 393.7 287 78.0
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 4.7e-107 391.7 240 77.9
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 4.7e-107 391.7 286 79.0
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 8.1e-107 391.0 238 76.9
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 4.0e-106 388.7 289 78.9
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.5e-105 386.7 238 78.2
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 2.6e-105 386.0 286 76.9
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 5.8e-105 384.8 289 77.2
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 9.8e-105 384.0 289 78.5
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.7e-104 382.1 273 69.6
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.9e-104 381.7 285 76.8
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 8.3e-104 380.9 286 74.5
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.1e-103 380.6 242 77.3
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 9.2e-103 377.5 244 76.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 2.7e-102 375.9 244 75.8
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.7e-102 375.9 286 76.6
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 4.6e-102 375.2 288 75.3
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 6.0e-102 374.8 286 76.2
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 7.8e-102 374.4 239 76.2
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.3e-101 372.9 234 75.6
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 3.9e-101 372.1 240 75.8
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.1e-101 371.7 241 75.5
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 5.1e-101 371.7 210 83.8
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 8.6e-101 370.9 286 75.2
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.5e-100 370.2 242 76.0
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.5e-100 369.4 284 75.7
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 4.3e-100 368.6 342 65.5
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 5.6e-100 368.2 225 77.8
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.2e-99 367.1 237 75.9
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.2e-99 367.1 314 72.3
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.1e-99 366.3 288 74.3
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.8e-99 365.9 289 74.4
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 3.6e-99 365.5 240 75.0
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 6.2e-99 364.8 286 74.8
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.8e-98 363.2 287 74.9
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.0e-97 359.8 239 72.8
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 3.4e-97 359.0 239 71.5
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.2e-96 356.3 288 70.8
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 4.9e-96 355.1 210 80.5
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.1e-95 352.1 286 73.4
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 7.1e-95 351.3 285 75.8
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.2e-94 350.5 241 72.2
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 2.1e-94 349.7 285 70.9
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 7.8e-94 347.8 234 70.5
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.7e-93 346.7 237 69.2
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 2.5e-92 342.8 286 71.7
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.3e-92 342.0 243 71.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.3e-92 342.0 220 71.8
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 6.2e-91 338.2 221 73.3
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.4e-90 337.0 238 69.3
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.7e-88 330.1 243 79.4
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 1.7e-88 330.1 238 69.3
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 3.2e-87 325.9 245 69.4
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.1e-86 323.2 245 69.0
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 2.7e-86 322.8 231 82.7
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.3e-85 320.5 289 70.2
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.7e-85 320.1 285 69.5
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 8.7e-85 317.8 248 68.1
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.1e-84 317.4 246 68.3
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.5e-84 317.0 245 67.8
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.5e-84 316.2 244 69.3
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 3.3e-84 315.8 248 68.1
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 8.1e-83 311.2 238 66.0
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 4.0e-82 308.9 245 67.3
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.0e-82 308.9 197 76.1
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.2e-81 307.4 244 67.6
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.5e-81 307.0 238 66.0
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 7.6e-81 304.7 232 67.2
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 8.4e-80 301.2 229 77.3
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.1e-74 284.3 241 61.0
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 4.5e-73 278.9 195 70.3
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.3e-72 277.3 217 65.4
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.4e-71 273.9 239 61.1
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.8e-69 266.9 229 71.2
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 2.8e-67 259.6 198 65.7
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 8.1e-67 258.1 238 60.9
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 9.0e-66 254.6 242 55.8
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.5e-62 242.7 244 54.9
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 8.8e-45 184.9 201 49.3
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 8.2e-43 178.3 131 66.4
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.0e-41 173.7 245 58.0
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.7e-38 163.3 241 41.9
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 1.8e-37 160.6 245 43.7
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 8.2e-35 151.8 185 51.9
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.1e-34 149.8 239 41.4
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 7.2e-31 138.7 241 38.6
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.8e-29 134.0 229 41.5
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 8.8e-29 131.7 221 40.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.3e-28 129.8 225 38.7
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 6.3e-27 125.6 233 37.8
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 3.1e-26 123.2 232 37.5
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.2e-25 121.3 249 35.7
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.2e-25 121.3 232 38.8
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.2e-25 121.3 229 37.1
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.6e-25 120.9 233 38.2
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.0e-24 118.2 230 34.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.0e-24 118.2 226 38.5
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.3e-24 117.9 233 35.2
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.9e-23 114.0 226 36.7
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.5e-23 113.6 240 36.7
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.2e-22 111.3 53 94.3
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.1e-22 109.0 229 37.1
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.0e-21 108.2 214 35.0
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.0e-21 108.2 239 36.4
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 2.7e-17 93.6 66 69.7
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 5.9e-17 92.4 271 31.7
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 7.7e-17 92.0 202 35.6
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.3e-16 91.3 103 51.5
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 8.5e-16 88.6 173 35.8
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.5e-15 87.8 205 33.7
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.2e-14 84.7 39 92.3
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.8e-14 83.6 52 71.2
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.8e-14 83.6 239 31.4
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 4.7e-14 82.8 256 27.7
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.5e-12 77.8 155 37.4
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 4.4e-12 76.3 152 36.2
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.7e-11 74.3 173 35.3
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 5.4e-10 69.3 150 35.3
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.6e-09 67.8 51 56.9
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.0e-08 65.1 51 52.9
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.5e-07 61.2 30 76.7
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 9.5e-07 58.5 176 29.0
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.2e-06 58.2 238 26.9


User provided reference genes

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