Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 3.6e-237 824.7 478 100.0
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 2.9e-149 532.7 438 71.5
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.1e-144 516.5 452 67.3
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.6e-144 515.8 451 65.9
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 8.1e-144 514.6 450 66.7
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.1e-143 514.2 440 67.3
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 1.1e-143 514.2 440 67.7
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 8.9e-143 511.1 450 66.7
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 8.9e-143 511.1 450 66.7
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.5e-142 510.4 437 68.4
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.5e-142 510.4 437 68.4
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.0e-142 510.0 440 68.0
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 3.4e-142 509.2 449 66.6
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.3e-141 507.3 440 67.5
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 4.9e-141 505.4 452 65.5
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 4.9e-141 505.4 440 66.8
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 8.4e-141 504.6 446 66.8
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 8.4e-141 504.6 453 64.7
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.4e-140 503.8 471 63.5
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.2e-140 502.7 449 65.0
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 9.2e-140 501.1 440 66.6
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.7e-139 499.6 440 67.0
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.7e-138 496.9 441 67.6
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.9e-137 493.4 449 62.8
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.2e-136 490.7 451 65.4
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.4e-135 487.3 431 67.5
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 2.4e-135 486.5 434 65.2
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.0e-134 483.4 440 63.6
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 5.8e-134 481.9 440 65.7
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 9.9e-134 481.1 450 64.0
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.7e-133 480.3 447 63.1
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 3.8e-133 479.2 440 64.1
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 4.9e-133 478.8 451 63.6
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.1e-132 477.6 438 63.2
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.4e-132 477.2 452 63.5
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.9e-132 476.9 440 64.8
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.9e-132 476.9 434 63.6
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.4e-132 476.5 415 68.0
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 9.3e-132 474.6 440 63.4
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.2e-131 474.2 426 66.2
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 2.7e-131 473.0 440 61.8
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 3.9e-130 469.2 455 62.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 5.1e-130 468.8 440 62.3
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.6e-130 468.4 444 63.5
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 8.7e-130 468.0 442 62.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.1e-129 467.6 449 61.0
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 4.3e-129 465.7 434 63.6
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 4.3e-129 465.7 446 61.0
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 7.3e-129 464.9 450 60.9
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 7.3e-129 464.9 446 61.2
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.8e-127 460.3 440 63.4
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.8e-127 460.3 456 60.7
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 6.9e-127 458.4 442 63.1
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 9.0e-127 458.0 450 59.1
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 9.0e-127 458.0 445 59.8
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.5e-126 457.2 458 59.0
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 2.0e-126 456.8 457 60.0
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.6e-126 456.4 446 60.8
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 3.4e-126 456.1 452 61.1
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 5.8e-126 455.3 451 59.6
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 7.6e-126 454.9 441 61.0
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 9.9e-126 454.5 445 61.6
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 9.9e-126 454.5 442 60.6
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.9e-125 453.0 444 60.6
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 6.4e-125 451.8 435 62.5
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 6.4e-125 451.8 453 61.8
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 8.4e-125 451.4 458 59.6
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-124 451.1 433 62.8
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-124 449.9 455 59.8
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 4.2e-124 449.1 449 61.5
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 7.1e-124 448.4 448 60.3
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.1e-123 446.8 449 59.0
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.1e-123 446.8 445 60.0
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 6.0e-123 445.3 434 62.4
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 6.0e-123 445.3 440 63.4
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.9e-121 440.3 434 61.5
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.5e-121 439.9 434 61.3
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 5.6e-121 438.7 442 58.1
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 7.4e-121 438.3 447 59.3
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.3e-120 437.6 429 63.9
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.3e-120 437.6 429 63.9
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.8e-120 435.6 448 59.4
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 6.2e-120 435.3 440 61.8
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 4.0e-119 432.6 449 58.1
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 2.6e-118 429.9 443 59.8
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 9.9e-118 427.9 436 60.6
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.9e-116 423.7 404 59.7
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.2e-116 422.9 442 58.1
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.9e-115 418.3 381 65.6
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 8.7e-114 414.8 480 55.6
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.1e-113 414.5 434 58.5
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 5.8e-110 402.1 415 59.3
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.4e-108 397.5 435 58.6
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.6e-107 394.0 434 57.8
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.1e-104 383.6 462 51.9
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.4e-103 380.2 328 68.0
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 3.3e-97 359.8 392 57.7
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.2e-94 351.3 363 57.3
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.3e-93 347.8 458 50.0
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 3.8e-93 346.3 314 65.3
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.0e-90 336.7 432 49.3
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 8.8e-90 335.1 379 54.1
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.3e-89 332.8 421 50.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.7e-89 332.4 390 54.9
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 6.1e-83 312.4 443 47.6
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.3e-80 304.7 458 47.2
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.8e-79 300.8 421 47.3
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 2.0e-78 297.4 270 63.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.9e-76 290.8 366 49.2
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.4e-74 284.6 454 43.0
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 8.8e-74 282.0 278 59.4
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.5e-68 264.6 228 68.0
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 3.7e-64 250.0 246 59.3
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.5e-60 238.0 333 50.5
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.3e-58 230.7 203 63.5
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 9.8e-57 225.3 365 46.3
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 3.8e-53 213.4 287 53.3
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 3.6e-51 206.8 176 66.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.0e-50 205.3 189 64.0
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 8.3e-48 195.7 248 51.6
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.1e-47 195.3 366 40.2
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.0e-42 178.7 185 58.4
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 2.6e-41 174.1 371 37.5
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.2e-40 171.0 165 62.4
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 8.3e-40 169.1 454 33.0
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 8.3e-40 169.1 274 44.5
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.9e-37 160.2 457 32.6
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.1e-36 158.7 144 66.0
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.5e-33 146.0 130 64.6
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.0e-29 135.6 160 54.4
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.7e-29 134.8 106 69.8
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 2.3e-29 134.4 168 54.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 2.3e-26 124.4 153 50.3
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 8.6e-21 105.9 94 64.9
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.4e-17 94.0 89 62.9
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 4.4e-17 93.6 149 46.3
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 3.8e-16 90.5 107 56.1
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 4.2e-15 87.0 189 40.7
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 4.2e-15 87.0 67 68.7
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.7e-13 81.6 93 54.8
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 2.4e-10 71.2 171 40.4
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 9.3e-07 59.3 37 81.1


User provided reference genes

Program Settings