Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1928.7 924 100.0
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1239.6 938 63.8
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1239.2 937 64.5
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1236.5 944 64.0
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1235.3 944 62.2
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1221.1 941 62.5
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1216.1 945 62.9
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1212.6 939 61.8
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1208.0 950 61.8
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1203.0 942 62.7
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1199.9 947 62.4
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1194.9 947 61.8
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1194.9 949 61.6
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1194.9 948 61.9
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1194.1 945 61.9
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1191.4 942 61.8
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1191.0 955 61.6
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1177.9 926 61.6
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1177.5 970 60.1
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1152.5 937 61.2
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1150.6 937 60.9
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1150.6 945 59.3
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1150.2 949 60.0
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1141.3 950 58.4
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1139.8 985 57.1
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1138.6 908 60.8
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1138.3 929 60.7
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1124.0 857 63.7
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1122.5 942 59.3
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1119.8 837 64.0
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1104.0 936 57.8
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1101.7 932 57.6
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1099.0 909 59.5
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1095.1 933 57.3
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1085.9 818 63.2
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1078.2 946 58.0
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 6.3e-312 1073.9 936 55.7
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 4.8e-310 1067.8 946 56.9
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 8.2e-310 1067.0 879 59.2
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 2.4e-309 1065.4 850 60.7
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 2.4e-309 1065.4 936 56.4
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 9.0e-309 1063.5 933 56.6
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 1.5e-308 1062.8 941 56.5
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 1.3e-307 1059.7 927 56.5
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 1.1e-306 1056.6 947 54.8
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 4.2e-306 1054.7 938 55.9
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 6.0e-305 1050.8 936 54.9
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 1.8e-304 1049.3 943 55.5
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 1.3e-302 1043.1 936 56.2
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 3.7e-302 1041.6 793 62.7
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 7.7e-300 1033.9 934 55.8
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 7.2e-298 1027.3 920 56.0
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 9.4e-298 1026.9 926 54.8
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 2.7e-297 1025.4 921 56.0
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 2.7e-297 1025.4 894 55.9
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 1.9e-295 1019.2 927 54.4
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 2.4e-293 1012.3 897 55.0
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 4.1e-293 1011.5 927 53.9
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 2.6e-292 1008.8 927 54.3
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 1.0e-291 1006.9 908 55.6
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 1.0e-288 996.9 916 55.7
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 3.9e-288 995.0 909 55.3
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 8.8e-288 993.8 928 53.7
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 1.1e-287 993.4 713 66.2
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 8.2e-286 987.3 936 52.1
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 7.7e-284 980.7 910 53.8
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 5.0e-283 978.0 926 53.3
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 5.0e-283 978.0 927 53.6
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 5.0e-283 978.0 853 57.0
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 6.5e-283 977.6 891 54.7
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 2.7e-281 972.2 914 54.2
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 1.1e-279 966.8 741 63.3
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.8e-277 959.5 806 56.9
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.8e-277 959.5 806 56.9
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 1.2e-276 956.8 941 50.7
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.1e-274 950.3 804 56.8
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 1.5e-271 939.9 971 49.2
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 1.2e-265 920.2 893 51.3
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 3.4e-263 912.1 815 56.0
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.4e-261 906.7 746 58.8
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 1.2e-260 903.7 907 52.1
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 8.9e-256 887.5 933 49.0
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 8.3e-254 880.9 720 59.2
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 1.6e-252 876.7 887 50.3
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 5.2e-248 861.7 816 53.7
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 8.3e-246 854.4 908 49.0
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 2.1e-236 823.2 636 62.4
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.6e-226 788.5 618 61.8
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 6.9e-216 755.0 943 45.5
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.4e-189 667.5 974 38.5
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 7.1e-189 665.2 645 51.2
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 1.8e-184 650.6 488 62.7
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 3.3e-178 629.8 575 53.2
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 5.7e-162 575.9 556 53.6
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.1e-160 570.1 442 61.3
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 5.0e-150 536.2 494 54.5
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.5e-146 524.6 465 56.1
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 5.5e-141 506.1 505 51.1
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 1.6e-124 451.4 864 31.7
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.8e-123 448.0 402 57.7
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 1.2e-114 418.7 384 53.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.4e-99 367.9 307 56.4
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.9e-85 321.6 286 59.4
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 1.9e-72 278.5 254 59.1
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 4.3e-69 267.3 284 51.1
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.1e-63 248.4 287 45.3
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 3.6e-63 247.7 294 43.9
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 3.7e-60 237.7 156 69.2
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.7e-49 202.2 259 45.2
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 1.1e-35 156.4 105 71.4
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 3.8e-33 147.9 159 50.9
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 2.5e-32 145.2 135 53.3
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.6e-31 142.5 159 49.7
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 9.8e-29 133.3 215 38.1
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 4.1e-27 127.9 86 62.8
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 7.3e-24 117.1 910 22.4
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 1.2e-18 99.8 93 51.6
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 8.6e-17 93.6 104 47.1
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.5e-16 92.0 90 48.9
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.2e-11 75.1 54 57.4
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 5.4e-11 74.3 84 51.2
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 3.5e-10 71.6 61 52.5
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 7.8e-10 70.5 53 58.5
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 1.7e-09 69.3 62 54.8


User provided reference genes

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