Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.6e-192 674.9 371 100.0
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 8.4e-157 557.4 319 87.1
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 5.5e-156 554.7 319 86.8
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.6e-155 553.1 326 85.3
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.7e-155 552.4 326 85.3
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 6.0e-155 551.2 330 84.5
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 7.9e-155 550.8 370 80.3
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-154 550.4 324 86.4
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-154 549.7 324 86.1
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 3.9e-154 548.5 324 85.8
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 5.1e-154 548.1 323 85.1
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-153 546.6 324 85.2
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 3.3e-153 545.4 327 84.1
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.3e-152 543.5 330 82.4
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-152 543.5 317 86.8
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 2.1e-152 542.7 329 84.2
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-152 542.0 324 85.2
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 4.8e-152 541.6 332 83.7
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.4e-151 540.0 327 82.6
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.4e-151 540.0 330 81.8
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 5.3e-151 538.1 320 84.1
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 9.0e-151 537.3 355 77.7
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.2e-150 537.0 361 77.3
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.5e-150 536.6 335 82.4
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.0e-150 536.2 315 84.8
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 5.9e-150 534.6 316 84.5
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 1.3e-149 533.5 327 82.0
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-149 533.1 325 83.1
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.7e-149 533.1 332 81.3
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 2.2e-149 532.7 325 82.5
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 3.8e-149 531.9 316 83.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.8e-149 531.9 321 81.6
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 5.0e-149 531.6 316 83.9
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 6.5e-149 531.2 318 83.0
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 6.5e-149 531.2 355 75.8
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 8.4e-149 530.8 330 80.6
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.1e-148 530.4 320 84.1
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.4e-148 530.0 328 79.9
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 2.5e-148 529.3 326 81.3
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.2e-148 528.5 314 85.7
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.2e-148 528.5 324 82.4
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.1e-147 526.2 316 83.2
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 3.5e-147 525.4 362 78.2
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 7.9e-147 524.2 311 83.9
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 8.7e-146 520.8 320 80.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 8.7e-146 520.8 320 80.9
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 1.1e-145 520.4 356 75.3
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.5e-145 520.0 316 82.3
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.5e-145 520.0 321 80.1
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.5e-145 520.0 321 80.1
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 9.7e-145 517.3 320 80.6
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.6e-144 516.5 358 73.5
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.6e-144 516.5 318 81.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 3.7e-144 515.4 291 89.0
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.7e-144 515.4 326 79.4
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 8.2e-144 514.2 333 79.0
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.1e-143 513.8 333 79.3
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.1e-143 513.8 333 79.3
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.1e-143 513.8 317 81.1
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.8e-143 513.1 320 81.2
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.8e-143 513.1 323 79.9
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.8e-143 513.1 320 80.0
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.4e-143 512.7 333 79.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.4e-143 512.7 333 79.0
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.4e-143 512.7 333 79.0
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 6.9e-143 511.1 315 80.0
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 6.9e-143 511.1 330 79.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.5e-142 510.0 320 80.6
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.0e-142 509.6 326 79.8
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 2.6e-142 509.2 334 77.5
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 2.6e-142 509.2 320 80.3
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.4e-142 508.8 334 77.2
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 3.4e-142 508.8 319 79.3
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.5e-142 508.4 320 80.6
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.5e-142 508.4 320 80.6
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.5e-142 508.4 320 80.6
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.0e-141 507.3 326 76.7
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.3e-141 506.9 320 79.7
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.7e-141 506.5 317 80.1
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 2.2e-141 506.1 300 83.3
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.9e-141 505.8 321 78.2
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 6.5e-141 504.6 317 80.1
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.1e-140 503.8 319 78.7
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 7.2e-140 501.1 318 78.0
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.6e-139 498.8 322 77.6
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.0e-138 497.3 319 76.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.0e-138 497.3 320 78.1
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 3.0e-138 495.7 321 78.2
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.1e-138 495.0 322 77.3
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.1e-137 493.8 314 77.4
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.5e-137 493.4 295 81.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 3.3e-137 492.3 300 81.0
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.1e-135 487.3 300 82.3
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.4e-135 486.9 319 75.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 5.3e-135 485.0 317 79.5
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.2e-134 483.8 308 78.2
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 3.4e-134 482.3 319 76.8
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.9e-133 479.2 297 81.8
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 5.0e-133 478.4 315 77.8
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-131 473.0 301 80.7
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.1e-130 468.4 300 77.3
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.7e-130 468.0 319 72.7
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 9.7e-129 464.2 300 75.7
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.2e-128 463.0 345 69.3
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 3.7e-128 462.2 311 74.6
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 5.3e-127 458.4 314 76.8
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 2.6e-126 456.1 277 83.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 7.7e-126 454.5 302 76.8
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.0e-125 454.1 349 65.3
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 2.9e-125 452.6 331 71.0
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.6e-123 446.8 264 84.1
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.1e-123 446.4 269 82.9
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 3.6e-123 445.7 316 69.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.4e-122 443.7 315 69.2
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.0e-122 442.6 314 69.1
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.1e-121 440.7 366 64.2
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.5e-121 440.3 321 72.6
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.0e-118 429.9 310 69.7
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.0e-118 429.9 286 76.9
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.1e-116 424.1 261 83.5
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.0e-111 404.8 320 65.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.0e-111 404.8 320 65.6
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.5e-109 398.3 242 82.6
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 6.1e-107 391.7 234 84.6
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.8e-106 390.2 320 65.3
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.0e-106 389.4 321 64.5
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 3.0e-106 389.4 234 79.9
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 5.2e-106 388.7 265 73.6
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 8.8e-106 387.9 314 63.1
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.8e-104 382.9 299 67.6
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.5e-92 344.0 228 76.3
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.8e-89 331.3 194 81.4
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.0e-85 318.9 233 71.7
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 3.3e-84 316.2 194 77.3
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.2e-83 314.3 320 54.7
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.5e-76 288.1 262 64.1
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.6e-75 287.3 197 76.6
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 2.3e-69 266.9 200 73.0
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.1e-63 248.1 144 79.2
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.3e-61 240.4 167 77.8
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.8e-42 177.6 133 67.7
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.5e-41 174.5 118 73.7
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.1e-39 165.6 125 61.6
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-38 164.5 124 66.9
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 9.0e-34 148.7 82 81.7
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 9.0e-34 148.7 117 73.5
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.3e-32 144.8 124 66.1
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.5e-31 140.6 98 70.4
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 4.6e-30 136.3 118 67.8
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-29 134.4 85 74.1
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.2e-25 121.7 88 72.7
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 5.0e-24 116.3 289 29.1
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.4e-23 112.1 86 64.0
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 4.6e-22 109.8 79 79.7
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.4e-18 97.4 49 85.7
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.5e-17 94.7 70 60.0
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.6e-17 94.0 56 69.6
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 7.7e-17 92.4 73 72.6
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 4.4e-12 76.6 52 67.3


User provided reference genes

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