Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.5e-164 582.0 295 100.0
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.5e-111 406.8 276 76.4
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 6.0e-105 384.8 241 79.3
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 7.8e-105 384.4 269 73.6
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 3.9e-104 382.1 287 70.7
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 5.0e-104 381.7 262 74.4
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 6.6e-104 381.3 272 74.3
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.9e-103 379.8 268 72.4
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.9e-103 379.8 269 72.9
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.9e-103 379.8 269 72.9
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 7.3e-103 377.9 277 71.5
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.2e-102 377.1 277 70.8
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 3.6e-102 375.6 280 71.8
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 3.6e-102 375.6 271 72.0
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 6.2e-102 374.8 280 70.4
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 8.0e-102 374.4 271 72.0
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 1.8e-101 373.2 252 75.4
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.8e-101 373.2 275 72.7
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 2.3e-101 372.9 275 72.7
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 3.1e-101 372.5 276 69.2
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 4.0e-101 372.1 277 68.6
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-101 372.1 277 68.6
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 4.0e-101 372.1 272 69.9
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.0e-101 372.1 264 73.9
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 5.2e-101 371.7 284 68.3
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 5.2e-101 371.7 284 68.3
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.2e-101 371.7 273 72.2
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 1.2e-100 370.5 282 68.8
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.2e-100 370.5 262 74.4
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 3.4e-100 369.0 267 72.7
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.4e-100 369.0 267 72.7
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 5.8e-100 368.2 269 71.0
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 7.5e-100 367.9 267 72.7
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 9.8e-100 367.5 279 68.8
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.3e-99 367.1 258 72.1
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 1.7e-99 366.7 283 67.5
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.7e-99 366.7 282 69.1
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 2.2e-99 366.3 271 70.1
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 3.7e-99 365.5 265 69.8
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 4.9e-99 365.2 279 69.2
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 4.9e-99 365.2 280 68.2
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 4.9e-99 365.2 274 70.1
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 4.9e-99 365.2 269 70.6
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 6.4e-99 364.8 279 68.8
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 6.4e-99 364.8 242 74.4
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 6.4e-99 364.8 272 69.5
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.1e-98 364.0 272 69.1
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 1.4e-98 363.6 242 74.0
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.4e-98 362.8 278 69.8
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.4e-98 361.7 256 73.0
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 7.0e-98 361.3 263 72.2
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 9.2e-98 360.9 268 69.0
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.6e-97 360.1 239 77.0
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.1e-97 359.8 261 70.9
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.6e-97 358.6 288 65.6
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.0e-97 358.2 241 74.3
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 7.8e-97 357.8 272 68.0
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-96 357.1 240 73.8
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.3e-96 357.1 279 66.3
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.3e-96 357.1 276 68.8
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.3e-96 357.1 276 68.8
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 2.3e-96 356.3 240 72.9
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 2.3e-96 356.3 240 72.9
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.9e-96 355.5 271 69.4
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 3.9e-96 355.5 281 66.5
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 5.1e-96 355.1 271 69.7
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 6.6e-96 354.8 281 65.5
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.1e-95 354.0 251 72.1
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.9e-95 353.2 280 66.8
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.9e-95 353.2 274 69.0
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 3.3e-95 352.4 250 69.2
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 7.3e-95 351.3 281 67.3
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 9.5e-95 350.9 282 66.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.2e-94 350.5 304 63.2
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 2.1e-94 349.7 282 65.6
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.8e-94 349.4 282 65.2
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 3.6e-94 349.0 267 68.9
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.6e-94 349.0 261 69.0
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 4.7e-94 348.6 246 69.9
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 8.1e-94 347.8 245 70.6
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.4e-93 347.1 277 65.7
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 3.1e-93 345.9 279 65.6
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 6.8e-93 344.7 221 75.1
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 6.8e-93 344.7 254 70.5
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 6.8e-93 344.7 229 73.4
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.0e-92 343.2 239 72.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.0e-92 343.2 281 64.4
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 5.8e-92 341.7 281 64.4
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.7e-91 340.1 271 66.8
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.7e-91 340.1 250 70.0
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 6.4e-91 338.2 286 63.3
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 3.2e-90 335.9 277 65.3
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.2e-90 335.9 264 67.0
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 7.1e-90 334.7 271 64.2
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.2e-89 334.0 253 67.2
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.6e-89 333.6 217 72.8
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.5e-89 332.4 254 66.1
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 4.6e-89 332.0 259 66.8
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.0e-88 330.9 248 66.9
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 3.9e-88 328.9 286 63.6
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.5e-87 326.2 277 65.3
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 3.3e-87 325.9 252 63.1
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 7.3e-87 324.7 281 62.3
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.2e-86 323.9 276 65.9
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.4e-85 320.5 278 64.4
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.4e-85 320.5 279 58.4
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.4e-85 320.5 255 65.5
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 6.8e-85 318.2 281 61.6
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 8.9e-85 317.8 295 59.0
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 3.4e-84 315.8 214 75.7
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 4.4e-84 315.5 275 62.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 9.9e-84 314.3 248 65.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 4.2e-82 308.9 252 64.3
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 4.2e-82 308.9 238 66.0
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 3.0e-80 302.8 268 60.4
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.1e-79 300.8 239 62.3
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.1e-78 296.6 239 63.2
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.4e-77 293.1 275 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 9.6e-71 271.2 238 57.1
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.3e-70 270.8 208 70.2
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.1e-69 267.7 181 75.1
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 3.4e-68 262.7 241 54.4
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.1e-66 257.7 239 54.8
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 5.4e-66 255.4 249 55.4
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.1e-65 253.4 274 52.9
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.6e-65 252.3 179 70.9
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.9e-64 249.2 267 52.8
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.3e-63 245.7 281 48.4
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 4.9e-59 232.3 242 54.1
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.5e-57 226.1 196 57.1
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 4.3e-55 219.2 123 84.6
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 5.3e-53 212.2 128 75.8
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.4e-51 204.9 182 60.4
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 8.4e-51 204.9 123 79.7
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.5e-44 184.1 142 67.6
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.5e-42 175.6 225 49.3
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.5e-42 175.6 262 40.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 9.4e-42 174.9 128 67.2
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 3.6e-41 172.9 95 86.3
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 6.7e-40 168.7 95 84.2
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 5.9e-36 155.6 289 37.7
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 5.5e-34 149.1 217 42.4
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 5.1e-32 142.5 192 44.3
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 7.0e-29 132.1 157 51.0
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 4.5e-28 129.4 159 51.6
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.5e-26 124.4 82 72.0
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 2.6e-23 113.6 88 62.5
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 7.4e-23 112.1 196 42.3
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.7e-22 109.8 60 83.3
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 1.6e-20 104.4 135 49.6
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.0e-20 104.0 78 61.5
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 3.5e-20 103.2 72 66.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-18 98.2 69 68.1
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.5e-18 97.8 136 40.4
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 2.3e-16 90.5 254 28.3
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 4.4e-15 86.3 152 34.9
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 4.4e-15 86.3 50 82.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 2.8e-14 83.6 138 31.9
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.2e-12 78.2 272 25.0
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 2.2e-11 73.9 253 25.3
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 6.1e-09 65.9 297 25.3
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 1.3e-06 58.2 142 32.4


User provided reference genes

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