Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 0.0e+00 1225.7 635 100.0
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.7e-234 816.2 639 69.6
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.5e-233 813.1 639 69.6
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.1e-217 760.4 637 64.7
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.9e-217 759.6 661 63.2
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.7e-213 746.5 653 63.4
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.2e-213 746.1 651 63.4
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 1.1e-209 733.8 526 71.5
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 2.1e-208 729.6 631 62.9
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 4.0e-207 725.3 523 71.7
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 1.2e-206 723.8 483 75.6
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.2e-206 723.8 648 61.9
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.5e-206 723.4 483 77.0
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 9.9e-206 720.7 522 71.8
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 3.7e-205 718.8 664 60.2
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 1.9e-204 716.5 641 61.3
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 3.2e-204 715.7 533 70.9
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 5.4e-204 714.9 636 61.2
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 7.1e-204 714.5 490 74.7
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 9.2e-204 714.1 653 60.6
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.1e-203 713.0 479 74.3
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 2.7e-203 712.6 629 63.8
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 2.7e-203 712.6 756 55.8
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 1.7e-202 709.9 521 70.4
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 3.9e-202 708.8 700 57.6
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.1e-201 707.2 636 61.8
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 3.3e-201 705.7 718 57.2
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 4.3e-201 705.3 631 62.1
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 3.6e-200 702.2 658 59.3
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 4.7e-200 701.8 523 68.8
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 6.2e-200 701.4 490 72.0
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.5e-198 696.8 671 57.8
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.5e-198 696.8 671 57.8
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 2.6e-198 696.0 649 59.9
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 9.9e-198 694.1 665 59.1
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 1.3e-197 693.7 488 73.0
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 3.8e-197 692.2 490 72.7
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 4.9e-197 691.8 643 61.1
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 1.4e-196 690.3 483 71.8
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 3.2e-196 689.1 692 57.2
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 3.2e-196 689.1 486 71.2
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 7.1e-196 688.0 687 57.2
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 1.2e-195 687.2 534 67.6
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.9e-193 679.9 539 65.3
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 9.6e-193 677.6 522 66.1
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.6e-192 676.8 522 65.9
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 2.1e-192 676.4 606 60.6
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 2.8e-192 676.0 485 70.5
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 4.7e-192 675.2 484 69.2
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 4.7e-192 675.2 716 55.2
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 6.2e-192 674.9 486 68.7
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 8.1e-192 674.5 486 68.7
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 1.1e-191 674.1 651 59.1
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.4e-191 673.7 489 68.9
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.4e-191 673.7 535 64.9
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 1.8e-191 673.3 525 67.0
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 3.1e-191 672.5 477 72.7
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 9.0e-191 671.0 522 67.8
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.5e-190 670.2 489 72.6
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 1.5e-190 670.2 490 69.2
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 1.3e-189 667.2 532 65.2
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.9e-189 666.0 531 64.6
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 8.4e-189 664.5 490 67.6
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 4.2e-188 662.1 486 69.3
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.2e-187 660.6 642 57.9
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 3.5e-187 659.1 524 65.3
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 3.5e-187 659.1 488 68.6
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 6.6e-186 654.8 502 68.5
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 8.7e-186 654.4 571 65.1
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 5.6e-185 651.7 652 56.7
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 5.6e-185 651.7 654 56.7
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 7.3e-185 651.4 540 62.2
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.8e-183 646.7 491 66.0
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 3.1e-183 646.0 618 59.4
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 5.3e-183 645.2 536 64.0
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 5.8e-182 641.7 598 58.0
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 5.8e-182 641.7 500 66.0
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 7.6e-182 641.3 488 66.8
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 1.9e-180 636.7 484 67.1
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 3.2e-180 636.0 496 65.7
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.2e-179 634.0 492 66.7
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 3.9e-178 629.0 658 55.2
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.5e-177 627.1 544 61.2
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.3e-176 624.0 665 54.7
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 2.1e-176 623.2 584 58.2
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 8.1e-176 621.3 546 62.8
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.8e-175 620.2 496 64.7
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 3.2e-172 609.4 559 58.1
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 4.6e-171 605.5 640 55.6
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 5.1e-170 602.1 588 59.2
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 3.8e-165 585.9 392 77.8
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 7.1e-164 581.6 581 58.3
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 1.3e-162 577.4 580 58.1
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 5.3e-159 565.5 596 55.4
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.2e-157 560.1 573 54.3
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.8e-154 550.4 393 73.8
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 8.5e-149 531.6 529 58.0
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 7.2e-148 528.5 643 48.2
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 7.4e-145 518.5 383 68.7
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 2.0e-142 510.4 414 67.9
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 2.2e-141 506.9 527 52.2
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 8.5e-141 505.0 485 57.3
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 9.1e-135 485.0 509 50.5
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 2.3e-130 470.3 390 62.6
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 3.0e-130 469.9 291 82.5
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 8.2e-128 461.8 395 61.8
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 9.1e-127 458.4 310 77.7
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.1e-119 434.9 502 49.0
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.1e-111 408.3 518 46.7
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 3.5e-110 403.3 362 60.2
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.3e-109 401.4 605 41.2
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.3e-101 374.0 422 53.1
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 3.0e-101 373.6 370 54.9
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 4.4e-97 359.8 369 53.9
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 6.4e-96 355.9 308 64.3
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.9e-95 354.4 490 41.6
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 3.9e-93 346.7 266 66.5
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.6e-92 342.8 395 51.6
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 8.1e-91 339.0 328 60.1
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.7e-85 321.2 527 39.3
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 6.2e-83 312.8 195 80.0
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 1.8e-82 311.2 251 64.9
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 1.8e-82 311.2 251 64.9
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 1.9e-79 301.2 258 62.4
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 1.7e-77 294.7 289 54.7
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 5.6e-76 289.7 414 43.0
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 6.2e-75 286.2 194 76.8
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.1e-70 271.2 191 70.2
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.4e-66 258.5 371 45.8
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 2.1e-62 244.6 178 69.7
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 2.7e-62 244.2 244 56.6
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 1.8e-61 241.5 155 82.6
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 9.6e-60 235.7 647 29.1
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.0e-53 214.2 268 47.4
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.8e-50 204.9 246 49.6
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 2.4e-50 204.5 147 73.5
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.3e-50 203.4 247 49.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 9.3e-47 192.6 126 77.8
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 4.6e-46 190.3 157 68.8
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 1.3e-40 172.2 108 78.7
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.7e-35 155.2 256 40.2
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.4e-34 151.4 241 40.7
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.2e-33 149.1 223 41.3
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 1.5e-33 148.7 247 45.3
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 1.7e-32 145.2 166 46.4
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 5.0e-32 143.7 262 37.4
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 1.6e-30 138.7 109 64.2
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 1.0e-29 136.0 237 36.7
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 1.4e-26 125.6 253 37.5
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 1.1e-20 105.9 141 48.9
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 5.3e-18 97.1 60 80.0
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.6e-17 94.7 69 66.7
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-16 92.0 131 43.5
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.8e-16 90.9 70 61.4
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.1e-15 89.4 51 82.4
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 1.2e-14 85.9 74 60.8
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 8.0e-14 83.2 53 71.7
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 2.6e-12 78.2 122 41.0
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 7.5e-12 76.6 51 72.5
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 1.8e-10 72.0 51 60.8
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 3.1e-10 71.2 51 60.8
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 3.1e-10 71.2 51 60.8
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 3.1e-10 71.2 53 62.3
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 3.1e-10 71.2 51 66.7
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-10 70.9 81 50.6
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.3e-10 70.5 70 45.7
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 3.5e-09 67.8 52 69.2
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 2.9e-08 64.7 48 68.8
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 3.2e-07 61.2 51 60.8


User provided reference genes

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