Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 4.3e-129 464.9 277 100.0
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.7e-91 339.3 275 64.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.1e-89 334.0 272 63.2
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 2.8e-88 329.3 276 60.1
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 2.6e-86 322.8 275 66.9
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.3e-85 320.5 276 59.4
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.7e-85 320.1 276 64.5
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.8e-85 318.9 272 62.9
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 3.8e-85 318.9 276 58.7
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.4e-84 317.0 272 59.9
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.4e-84 317.0 276 58.7
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 3.2e-84 315.8 275 58.5
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 7.1e-84 314.7 242 68.2
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 6.0e-83 311.6 259 61.8
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.0e-82 309.3 272 57.7
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 3.0e-82 309.3 277 65.7
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 3.9e-82 308.9 270 60.0
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.1e-82 308.5 253 62.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 4.3e-81 305.4 274 58.0
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 7.4e-81 304.7 257 59.5
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 9.6e-81 304.3 257 60.7
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 1.3e-80 303.9 237 64.6
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.6e-80 303.5 266 56.4
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.6e-80 303.5 276 57.6
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.6e-80 303.5 255 59.6
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.1e-80 303.1 273 58.6
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 3.6e-80 302.4 272 58.1
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 6.2e-80 301.6 270 59.3
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.4e-79 300.4 260 57.7
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.4e-79 300.4 262 57.3
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.4e-79 300.4 255 58.8
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.4e-79 300.4 275 62.5
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.4e-79 300.4 267 58.1
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.4e-79 299.7 275 56.7
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 2.4e-79 299.7 272 56.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 3.1e-79 299.3 251 59.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 5.3e-79 298.5 275 56.0
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 5.3e-79 298.5 249 60.2
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 9.0e-79 297.7 263 57.0
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.5e-78 297.0 253 59.3
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.0e-78 296.6 250 64.4
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.4e-78 295.8 275 56.0
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 3.4e-78 295.8 253 58.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 4.5e-78 295.4 253 58.9
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 5.8e-78 295.0 255 58.0
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.3e-77 293.9 270 56.3
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.3e-77 293.9 275 55.3
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.7e-77 293.5 275 55.6
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.7e-77 293.5 245 60.8
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.9e-77 292.7 256 56.6
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.8e-77 292.4 256 56.6
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.8e-77 292.4 256 56.6
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.8e-77 292.4 252 65.1
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 4.9e-77 292.0 255 57.3
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 6.4e-77 291.6 253 57.3
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 6.4e-77 291.6 253 57.3
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 6.4e-77 291.6 272 55.1
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 8.4e-77 291.2 256 56.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 7.1e-76 288.1 253 58.5
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.6e-75 287.0 287 55.1
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.1e-75 286.6 280 69.6
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 2.7e-75 286.2 268 59.0
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 7.9e-75 284.6 299 52.2
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 1.5e-73 280.4 255 57.6
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.5e-73 279.6 270 55.2
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.3e-73 279.3 273 53.1
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.6e-72 276.9 251 57.4
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.1e-72 276.6 252 56.7
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.8e-72 276.2 301 56.8
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.8e-72 276.2 273 63.0
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.8e-72 275.4 301 57.5
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 8.1e-72 274.6 255 69.8
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.1e-71 274.2 252 55.6
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.4e-71 273.1 252 55.2
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 3.1e-71 272.7 276 54.3
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 6.9e-71 271.6 247 55.1
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 6.9e-71 271.6 266 69.9
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.0e-70 270.0 298 51.7
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.0e-70 270.0 248 55.6
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 2.0e-70 270.0 274 68.2
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.0e-70 270.0 248 54.0
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 4.5e-70 268.9 249 54.6
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 5.8e-70 268.5 268 54.5
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.3e-69 267.3 268 52.2
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.3e-69 267.3 268 52.2
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.3e-69 267.3 249 54.6
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 4.9e-69 265.4 248 55.2
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 8.4e-69 264.6 249 55.4
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 8.4e-69 264.6 247 53.8
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.9e-68 263.5 208 64.9
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 2.1e-67 260.0 268 51.9
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 7.9e-67 258.1 240 52.9
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 3.0e-66 256.1 269 55.4
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 6.7e-66 255.0 270 51.1
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 8.7e-66 254.6 272 66.9
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.9e-65 253.4 248 54.8
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.8e-64 249.6 279 48.0
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.3e-64 248.4 276 66.3
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.0e-62 243.4 279 47.0
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 7.6e-62 241.5 244 70.1
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 6.5e-61 238.4 275 47.6
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 4.6e-59 232.3 173 65.9
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.5e-57 227.3 153 70.6
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.8e-56 222.2 153 68.6
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 7.7e-54 214.9 240 47.1
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.9e-52 210.3 268 42.9
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 6.1e-51 205.3 291 56.4
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 1.0e-50 204.5 263 43.7
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 8.5e-45 184.9 210 65.7
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.5e-38 162.9 167 51.5
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.2e-33 147.9 157 49.0
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.8e-32 142.5 347 34.6
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 6.3e-32 142.1 253 37.2
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-30 137.5 85 75.3
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.2e-27 127.9 173 42.8
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.2e-25 121.3 246 32.9
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 3.4e-25 119.8 76 72.4
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 6.3e-24 115.5 131 48.9
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.1e-23 112.8 237 33.3
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.8e-21 106.3 72 69.4
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-18 97.4 159 36.5
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.9e-16 89.4 75 53.3
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.7e-14 83.6 73 58.9
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 3.5e-14 83.2 71 53.5
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.5e-14 82.8 110 42.7
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 3.3e-12 76.6 71 50.7
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.2e-11 74.7 39 82.1
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 6.8e-10 68.9 62 48.4
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 8.9e-10 68.6 71 49.3
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-07 61.6 55 50.9
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 7.0e-07 58.9 47 55.3
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 4.6e-06 56.2 77 42.9
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 5.9e-06 55.8 37 67.6
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 5.9e-06 55.8 37 67.6


User provided reference genes

Program Settings