Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 1.5e-217 760.0 657 100.0
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 7.6e-76 289.3 607 64.4
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 2.2e-75 287.7 613 65.6
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 3.5e-73 280.4 611 66.8
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 6.6e-72 276.2 643 59.3
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 5.6e-71 273.1 610 62.0
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 8.1e-70 269.2 631 46.6
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 7.6e-68 262.7 657 48.2
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 3.8e-67 260.4 659 60.5
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.8e-64 251.5 556 64.6
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 1.8e-64 251.5 662 52.4
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 6.7e-64 249.6 602 55.3
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 1.5e-63 248.4 628 44.9
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 1.5e-63 248.4 616 57.0
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 4.3e-63 246.9 671 55.3
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 2.1e-62 244.6 613 57.4
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 2.8e-62 244.2 676 57.5
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 6.2e-62 243.0 412 67.2
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 2.4e-61 241.1 451 55.9
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 5.3e-61 240.0 666 55.0
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 5.3e-61 240.0 389 69.9
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.5e-60 238.4 609 58.0
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 2.0e-60 238.0 616 57.1
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.0e-60 238.0 396 59.6
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 7.6e-60 236.1 421 58.2
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 4.9e-59 233.4 616 60.7
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 6.4e-59 233.0 620 56.6
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 3.5e-57 227.3 435 61.6
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 4.6e-57 226.9 583 58.3
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 3.9e-56 223.8 607 59.1
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 1.1e-55 222.2 609 51.9
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 1.9e-55 221.5 447 56.4
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 5.6e-55 219.9 425 62.8
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 5.3e-53 213.4 385 67.0
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 6.9e-53 213.0 387 64.3
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 1.5e-52 211.8 444 63.7
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 4.5e-52 210.3 412 55.8
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 4.5e-52 210.3 412 56.3
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 2.9e-51 207.6 387 62.3
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 2.9e-51 207.6 598 47.8
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 4.9e-51 206.8 392 58.2
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 1.9e-50 204.9 412 44.9
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 9.3e-50 202.6 176 54.0
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 2.1e-49 201.4 244 44.7
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 3.5e-49 200.7 179 53.6
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 8.7e-48 196.1 620 59.8
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 3.3e-47 194.1 399 67.2
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 3.4e-44 184.1 195 47.2
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 3.4e-44 184.1 564 57.4
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 2.2e-43 181.4 165 52.7
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.8e-43 180.6 559 44.5
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 3.8e-43 180.6 617 46.8
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 4.6e-41 173.7 180 46.7
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 2.0e-39 168.3 567 53.8
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 9.7e-39 166.0 467 55.5
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.3e-38 165.6 467 57.8
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 1.5e-36 158.7 624 52.9
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 3.4e-36 157.5 233 37.8
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 3.4e-36 157.5 612 49.3
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 5.9e-36 156.8 172 44.2
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 2.9e-35 154.5 171 43.3
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 1.1e-34 152.5 616 46.8
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 2.5e-34 151.4 346 64.5
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 4.2e-34 150.6 171 43.3
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 1.8e-32 145.2 594 50.0
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 3.0e-32 144.4 558 52.2
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 2.6e-31 141.4 233 36.1
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.7e-30 138.7 107 63.6
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 3.7e-30 137.5 180 38.9
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 3.1e-29 134.4 235 35.3
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 2.0e-28 131.7 183 38.3
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 8.5e-27 126.3 518 25.7
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 2.5e-26 124.8 238 32.8
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 6.7e-24 116.7 87 64.4
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 4.8e-22 110.5 238 31.9
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 4.8e-22 110.5 238 31.9
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 8.2e-22 109.8 240 32.1
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 2.4e-21 108.2 239 30.5
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 3.5e-20 104.4 239 29.7
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 5.9e-20 103.6 240 31.2
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 6.5e-19 100.1 236 31.4
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 8.5e-19 99.8 226 30.1
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 3.2e-18 97.8 164 36.6
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 4.2e-18 97.4 280 59.3
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 1.8e-16 92.0 167 34.7
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 1.8e-16 92.0 145 37.2
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.1e-13 82.8 502 41.4
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 5.3e-13 80.5 61 63.9
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.0e-11 76.3 60 58.3
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 3.2e-10 71.2 280 26.4
DCAR_016913 Daucus carota HOM05D006596 ORTHO05D008497 3.6e-09 67.8 215 27.4
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 6.1e-09 67.0 181 25.4
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 8.0e-09 66.6 193 29.5
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 8.0e-09 66.6 193 29.5
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 1.8e-08 65.5 165 24.8
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 2.3e-08 65.1 165 25.5
Atru.chr4.2418 Acer truncatum HOM05D000424 ORTHO05D000355 3.0e-08 64.7 182 29.1
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 3.0e-08 64.7 176 25.6
DCAR_030676 Daucus carota HOM05D000424 ORTHO05D000355 3.0e-08 64.7 155 25.2
Potri.010G083800 Populus trichocarpa HOM05D000424 ORTHO05D000355 3.0e-08 64.7 203 23.6
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 6.8e-08 63.5 181 24.3
arahy.Tifrunner.gnm1.ann1.Q40RKA Arachis hypogaea HOM05D000424 ORTHO05D000355 8.8e-08 63.2 180 26.1
Peaxi162Scf00247g00063 Petunia axillaris HOM05D000424 ORTHO05D000355 8.8e-08 63.2 180 26.1
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 8.8e-08 63.2 95 33.7
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 1.2e-07 62.8 181 23.2
CANSAT64G0970 Cannabis sativa HOM05D006596 ORTHO05D008497 1.2e-07 62.8 182 25.3
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 1.2e-07 62.8 225 25.3
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 1.2e-07 62.8 89 39.3
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 1.5e-07 62.4 181 23.2
CSS0029634 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 1.5e-07 62.4 177 24.9
COL.COLO4_09255 Corchorus olitorius HOM05D000424 ORTHO05D002854 1.5e-07 62.4 156 25.0
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.5e-07 62.4 181 23.8
CSS0050477 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 3.4e-07 61.2 223 24.2
Cpa.g.sc18.34 Carica papaya HOM05D000424 ORTHO05D002854 3.4e-07 61.2 153 26.1
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 3.4e-07 61.2 181 23.8
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 3.4e-07 61.2 113 37.2
Rhsim08G0188000 Rhododendron simsii HOM05D007173 ORTHO05D009151 7.5e-07 60.1 187 26.7
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 9.8e-07 59.7 180 26.7
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.3e-06 59.3 174 21.8
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 2.2e-06 58.5 181 23.8
vmacro19218 Vaccinium macrocarpon HOM05D007173 ORTHO05D009151 2.8e-06 58.2 187 25.1
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 4.8e-06 57.4 241 25.3
Aa31LG1G16260 Aethionema arabicum HOM05D001904 ORTHO05D001854 6.3e-06 57.0 179 22.9
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 6.3e-06 57.0 179 22.3
VMungo0464G1642 Vigna mungo HOM05D007145 ORTHO05D008952 6.3e-06 57.0 161 25.5
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 8.3e-06 56.6 180 25.6


User provided reference genes

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