Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 7.4e-192 673.7 338 100.0
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 5.6e-91 338.6 274 64.2
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 7.3e-91 338.2 274 63.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.1e-90 336.7 275 63.6
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.1e-89 334.3 274 65.0
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.4e-89 334.0 276 64.5
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 3.1e-89 332.8 274 63.5
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 2.6e-88 329.7 274 62.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 6.4e-87 325.1 292 60.6
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 4.2e-86 322.4 282 60.6
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.3e-84 317.4 273 60.8
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.3e-84 316.6 272 62.9
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.5e-83 313.9 273 59.3
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.5e-83 313.9 274 61.7
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.5e-83 313.9 282 59.9
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.9e-83 313.5 275 59.3
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 9.0e-81 304.7 276 58.3
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 5.8e-80 302.0 274 59.1
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.7e-79 300.4 275 59.3
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.7e-79 300.4 275 57.5
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.9e-79 299.7 267 59.6
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 4.9e-79 298.9 274 57.3
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 8.4e-79 298.1 268 60.4
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 8.4e-79 298.1 267 59.2
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.1e-78 297.7 264 60.6
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-78 297.4 274 56.9
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 2.4e-78 296.6 274 59.5
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 4.2e-78 295.8 266 58.3
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 9.3e-78 294.7 267 58.8
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 3.5e-77 292.7 238 62.2
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 7.9e-77 291.6 263 60.8
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 7.9e-77 291.6 275 59.3
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 7.9e-77 291.6 263 56.7
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.0e-76 291.2 275 57.8
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.8e-76 290.4 277 57.4
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 2.3e-76 290.0 274 57.3
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.3e-76 290.0 267 58.1
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 3.9e-76 289.3 236 64.0
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 6.7e-76 288.5 275 55.3
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 2.5e-75 286.6 265 60.0
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.3e-74 284.3 272 55.1
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 1.6e-74 283.9 277 54.2
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.6e-74 283.9 277 54.9
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 3.7e-74 282.7 275 54.9
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 4.8e-74 282.3 266 57.9
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.8e-73 280.4 238 60.5
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.8e-73 280.4 272 54.8
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 2.4e-73 280.0 274 58.0
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 5.3e-73 278.9 283 54.8
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 6.9e-73 278.5 280 53.6
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 9.0e-73 278.1 271 56.1
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.4e-72 276.2 271 55.0
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 3.4e-72 276.2 270 54.1
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.7e-71 273.9 264 54.5
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.9e-71 272.3 248 58.5
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.4e-71 271.9 267 55.8
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.4e-71 271.6 267 56.2
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 8.4e-71 271.6 280 52.5
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.1e-70 271.2 231 59.7
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.4e-70 270.8 281 51.6
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 3.2e-70 269.6 276 53.3
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 4.2e-70 269.2 272 53.3
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 5.5e-70 268.9 239 56.1
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 7.1e-70 268.5 254 55.9
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 7.1e-70 268.5 254 55.9
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 9.3e-70 268.1 276 54.0
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.2e-69 267.7 272 52.9
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 2.7e-69 266.5 232 57.3
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.7e-69 266.5 275 54.5
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.5e-69 266.2 278 52.9
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.5e-69 266.2 223 62.8
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.8e-68 263.8 272 52.6
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 3.0e-68 263.1 272 52.6
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 3.9e-68 262.7 254 54.7
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 8.7e-68 261.5 272 52.9
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 8.7e-68 261.5 276 52.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 3.3e-67 259.6 274 52.9
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 9.6e-67 258.1 209 59.3
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.1e-66 256.9 272 52.2
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.1e-65 254.6 272 53.3
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.8e-65 253.8 274 49.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 3.1e-65 253.1 241 55.2
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 2.0e-64 250.4 206 61.7
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.6e-64 250.0 274 51.5
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 3.4e-64 249.6 268 52.2
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.5e-64 249.2 230 57.4
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 3.2e-62 243.0 225 57.8
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.3e-60 237.7 236 53.8
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 5.1e-60 235.7 198 60.6
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.5e-59 233.4 296 47.0
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 7.4e-59 231.9 198 60.1
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.7e-58 229.6 192 60.9
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.2e-56 224.6 274 46.7
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.9e-54 217.2 245 48.2
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-54 216.9 186 59.1
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.6e-53 214.2 267 46.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 6.1e-53 212.2 230 47.8
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-52 210.3 234 51.3
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-52 209.9 181 59.1
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 3.9e-52 209.5 241 47.7
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.7e-50 203.0 259 44.8
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 5.9e-48 195.7 161 60.9
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.2e-46 189.5 235 48.9
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.0e-44 183.3 192 50.0
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-38 164.5 176 50.6
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.3e-36 157.1 124 63.7
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 6.3e-34 149.1 153 51.0
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.1e-33 145.2 140 54.3
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.0e-31 141.7 122 59.0
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.1e-29 134.0 132 50.0
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 8.0e-29 132.1 221 36.2
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.0e-28 130.2 116 52.6
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.0e-28 129.8 204 40.2
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.7e-21 106.3 103 52.4
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.0e-20 103.2 84 57.1
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.0e-20 103.2 70 70.0
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 8.8e-20 102.1 114 46.5
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-17 95.1 89 55.1
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.4e-17 92.8 128 44.5
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.6e-16 91.3 80 58.8
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.7e-16 89.0 72 58.3
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-14 85.1 93 48.4
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.1e-14 85.1 82 45.1
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.9e-14 84.3 75 57.3
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-13 81.3 99 46.5
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.8e-13 80.5 66 53.0
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.4e-12 78.2 95 43.2
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.4e-12 78.2 95 41.1
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-10 71.2 88 45.5
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.4e-09 66.2 147 29.9
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.7e-07 61.2 137 31.4
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.7e-07 61.2 31 87.1
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.0e-07 59.7 89 40.4
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 4.3e-06 56.6 52 40.4
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 4.3e-06 56.6 52 40.4


User provided reference genes

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