Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1566 Punica granatum HOM05D062258 ORTHO05D003075 9.8e-56 219.9 114 100.0
PGR102G1732 Punica granatum HOM05D062258 ORTHO05D003075 3.4e-40 168.3 114 79.8
PGR042G1586 Punica granatum HOM05D000558 ORTHO05D003075 3.4e-24 115.2 75 81.3
Eucgr.A02066 Eucalyptus grandis HOM05D000558 ORTHO05D003075 1.3e-18 96.7 75 64.0
RcHm_v2.0_Chr3g0497551 Rosa chinensis HOM05D000558 ORTHO05D003075 1.1e-11 73.6 105 44.8
FvH4_6g00600 Fragaria vesca HOM05D000558 ORTHO05D003075 1.5e-11 73.2 105 43.8
FAN09G1157 Fragaria x ananassa HOM05D000558 ORTHO05D003075 1.5e-11 73.2 105 43.8
Lsat_1_v5_gn_1_59001 Lactuca sativa HOM05D000558 ORTHO05D003075 1.5e-11 73.2 75 52.0
CANSAT78G1454 Cannabis sativa HOM05D000558 ORTHO05D003075 1.9e-11 72.8 75 50.7
Oeu050292.1 Olea europaea HOM05D000558 ORTHO05D003075 2.5e-11 72.4 75 53.3
Oeu050293.1 Olea europaea HOM05D000558 ORTHO05D003075 2.5e-11 72.4 75 53.3
FAN14G5661 Fragaria x ananassa HOM05D000558 ORTHO05D003075 3.3e-11 72.0 105 43.8
QL07p020821 Quercus lobata HOM05D000558 ORTHO05D003075 3.3e-11 72.0 75 52.0
HanXRQChr01g0024451 Helianthus annuus HOM05D000558 ORTHO05D003075 7.4e-11 70.9 75 52.0
Haze_19391 Corylus avellana HOM05D000558 ORTHO05D003075 1.6e-10 69.7 75 54.7
Dinv37004 Davidia involucrata HOM05D000558 ORTHO05D003075 1.6e-10 69.7 75 54.7
Prupe.7G000900 Prunus persica HOM05D000558 ORTHO05D003075 2.1e-10 69.3 105 45.7
Actinidia22100 Actinidia chinensis HOM05D000558 ORTHO05D003075 6.2e-10 67.8 75 50.7
Cfa021586 Carpinus fangiana HOM05D000558 ORTHO05D001857 1.1e-09 67.0 105 43.8
CiPaw.03G236300 Carya illinoinensis HOM05D000558 ORTHO05D003075 1.4e-09 66.6 76 53.9
Peaxi162Scf00003g04830 Petunia axillaris HOM05D000558 ORTHO05D003075 1.4e-09 66.6 75 48.0
Lj1A1140T42 Lonicera japonica HOM05D000558 ORTHO05D003075 1.8e-09 66.2 105 41.0
ECA248G2202 Erigeron canadensis HOM05D000558 ORTHO05D001857 2.4e-09 65.9 75 49.3
Atru.chr5.346 Acer truncatum HOM05D000558 ORTHO05D003075 4.0e-09 65.1 75 46.7
Cc00_g09500 Coffea canephora HOM05D000558 ORTHO05D003075 4.0e-09 65.1 76 50.0
HanXRQChr13g0397611 Helianthus annuus HOM05D000558 ORTHO05D003075 4.0e-09 65.1 75 50.7
Nitab4.5_0007223g0030 Nicotiana tabacum HOM05D000558 ORTHO05D003075 4.0e-09 65.1 75 49.3
Atru.chr2.1256 Acer truncatum HOM05D000558 ORTHO05D003075 5.3e-09 64.7 105 39.0
Nitab4.5_0000812g0160 Nicotiana tabacum HOM05D000558 ORTHO05D003075 5.3e-09 64.7 75 48.0
Solyc10g078490.2 Solanum lycopersicum HOM05D000558 ORTHO05D003075 5.3e-09 64.7 75 49.3
VMungo1383G0665 Vigna mungo HOM05D000558 ORTHO05D003075 5.3e-09 64.7 79 46.8
Glyma.19G108400 Glycine max HOM05D000558 ORTHO05D003075 9.0e-09 63.9 78 44.9
Lsat_1_v5_gn_2_59281 Lactuca sativa HOM05D000558 ORTHO05D003075 9.0e-09 63.9 72 50.0
MD14G1000500 Malus domestica HOM05D000558 ORTHO05D003075 9.0e-09 63.9 75 48.0
SGA_v2.0_scaffold12G06252 Striga asiatica HOM05D000558 ORTHO05D003075 9.0e-09 63.9 74 47.3
HanXRQChr14g0437991 Helianthus annuus HOM05D000558 ORTHO05D003075 1.2e-08 63.5 72 45.8
Lj1g0000038 Lotus japonicus HOM05D000558 ORTHO05D003075 1.2e-08 63.5 76 47.4
Phvul.001G097000 Phaseolus vulgaris HOM05D000558 ORTHO05D003075 1.2e-08 63.5 79 44.3
Aqoxy5G02901 Aquilegia oxysepala HOM05D000558 ORTHO05D003075 2.0e-08 62.8 74 48.6
CAN.G960.54 Capsicum annuum HOM05D000558 ORTHO05D003075 2.0e-08 62.8 75 46.7
Ciclev10021916m.g Citrus clementina HOM05D000558 ORTHO05D003075 2.0e-08 62.8 75 45.3
Lsat_1_v5_gn_6_38381 Lactuca sativa HOM05D000558 ORTHO05D003075 2.0e-08 62.8 105 41.0
Rhsim04G0085200 Rhododendron simsii HOM05D000558 ORTHO05D003075 2.0e-08 62.8 105 44.8
Actinidia17314 Actinidia chinensis HOM05D000558 ORTHO05D003075 2.6e-08 62.4 75 50.7
Glyma.16G043800 Glycine max HOM05D000558 ORTHO05D003075 3.4e-08 62.0 78 43.6
TAR362G1123 Trochodendron aralioides HOM05D000558 ORTHO05D003075 3.4e-08 62.0 75 50.7
Nn4g25032 Nelumbo nucifera HOM05D000558 ORTHO05D003075 4.5e-08 61.6 75 45.3
Oeu014723.2 Olea europaea HOM05D000558 ORTHO05D003075 4.5e-08 61.6 75 49.3
Aa31LG5G14650 Aethionema arabicum HOM05D000558 ORTHO05D003075 5.8e-08 61.2 75 45.3
Medtr7g085070 Medicago truncatula HOM05D000558 ORTHO05D003075 5.8e-08 61.2 78 43.6
Potri.019G030900 Populus trichocarpa HOM05D000558 ORTHO05D003075 5.8e-08 61.2 105 40.0
arahy.Tifrunner.gnm1.ann1.I0HFQI Arachis hypogaea HOM05D000558 ORTHO05D003075 7.6e-08 60.8 76 46.1
arahy.Tifrunner.gnm1.ann1.K4UY0G Arachis hypogaea HOM05D000558 ORTHO05D003075 7.6e-08 60.8 76 46.1
DCAR_013699 Daucus carota HOM05D000558 ORTHO05D001857 7.6e-08 60.8 75 48.0
Manes.09G144400 Manihot esculenta HOM05D000558 ORTHO05D003075 9.9e-08 60.5 75 45.3
PSO170G1677 Papaver somniferum HOM05D000558 ORTHO05D003075 9.9e-08 60.5 75 46.7
PSO357G0258 Papaver somniferum HOM05D000558 ORTHO05D003075 9.9e-08 60.5 75 46.7
TPR.G5889 Trifolium pratense HOM05D000558 ORTHO05D003075 9.9e-08 60.5 78 43.6
Actinidia38626 Actinidia chinensis HOM05D000558 ORTHO05D003075 1.3e-07 60.1 75 49.3
Sopen12g009990 Solanum pennellii HOM05D000558 ORTHO05D003075 1.3e-07 60.1 75 42.7
PGSC0003DMG400018823 Solanum tuberosum HOM05D000558 ORTHO05D003075 1.3e-07 60.1 75 42.7
Solyc12g019690.2 Solanum lycopersicum HOM05D000558 ORTHO05D003075 1.7e-07 59.7 75 41.3
TWI60G1089 Tripterygium wilfordii HOM05D000558 ORTHO05D003075 1.7e-07 59.7 75 49.3
SalBow3G2963 Salvia bowleyana HOM05D000558 ORTHO05D003075 2.2e-07 59.3 99 41.4
Psat3g091120 Pisum sativum HOM05D000558 ORTHO05D003075 2.9e-07 58.9 79 46.8
Duzib177G0778 Durio zibethinus HOM05D000558 ORTHO05D003075 3.8e-07 58.5 75 38.7
Gohir.D13G170400 Gossypium hirsutum HOM05D000558 ORTHO05D003075 3.8e-07 58.5 74 41.9
Gorai.013G191500 Gossypium raimondii HOM05D000558 ORTHO05D003075 4.9e-07 58.2 74 41.9
Lalb_Chr22g0359461 Lupinus albus HOM05D000558 ORTHO05D003075 4.9e-07 58.2 76 42.1
DCAR_019901 Daucus carota HOM05D000558 ORTHO05D003075 6.4e-07 57.8 75 45.3
ECA233G6200 Erigeron canadensis HOM05D000558 ORTHO05D001857 6.4e-07 57.8 75 42.7
Gohir.A11G240900 Gossypium hirsutum HOM05D000558 ORTHO05D003075 6.4e-07 57.8 75 41.3
Gohir.A13G166900 Gossypium hirsutum HOM05D000558 ORTHO05D003075 6.4e-07 57.8 74 41.9
Ca_08247_v3 Cicer arietinum L. HOM05D000558 ORTHO05D001857 8.4e-07 57.4 79 44.3
Peaxi162Scf00076g00715 Petunia axillaris HOM05D000558 ORTHO05D003075 8.4e-07 57.4 75 44.0
Sabra19G0037500 Salix brachista HOM05D000558 ORTHO05D003075 8.4e-07 57.4 105 37.1
Sabra19G0040000 Salix brachista HOM05D000558 ORTHO05D003075 8.4e-07 57.4 105 37.1
Duzib128G0273 Durio zibethinus HOM05D000558 ORTHO05D003075 1.1e-06 57.0 75 41.3
Hund03237 Selenicereus undatus HOM05D000558 ORTHO05D003075 1.4e-06 56.6 75 40.0
PGSC0003DMG400008358 Solanum tuberosum HOM05D000558 ORTHO05D003075 1.4e-06 56.6 75 42.7
Migut.G00789 Erythranthe guttata HOM05D000558 ORTHO05D003075 1.9e-06 56.2 73 42.5
Lalb_Chr24g0403071 Lupinus albus HOM05D000558 ORTHO05D003075 1.9e-06 56.2 76 44.7
Lj2A356T43 Lonicera japonica HOM05D000558 ORTHO05D003075 2.4e-06 55.8 72 43.1
MBI18_g38872_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D003075 2.4e-06 55.8 74 41.9
HPP92_016975 Vanilla planifolia HOM05D000558 ORTHO05D003075 2.4e-06 55.8 75 40.0
CAN.G960.53 Capsicum annuum HOM05D000558 ORTHO05D003075 4.2e-06 55.1 75 42.7
MELO3C008793.2 Cucumis melo HOM05D000558 ORTHO05D003075 4.2e-06 55.1 75 40.0
Sc06g0001430 Simmondsia chinensis HOM05D000558 ORTHO05D003075 4.2e-06 55.1 76 40.8
TWI34G0942 Tripterygium wilfordii HOM05D000558 ORTHO05D003075 4.2e-06 55.1 105 40.0
ATR0568G170 Amborella trichopoda HOM05D000558 ORTHO05D003075 5.5e-06 54.7 75 44.0
CsaV3_4G013360 Cucumis sativus L. HOM05D000558 ORTHO05D003075 5.5e-06 54.7 73 41.1
Gohir.D11G250300 Gossypium hirsutum HOM05D000558 ORTHO05D003075 5.5e-06 54.7 75 40.0
Gorai.007G268300 Gossypium raimondii HOM05D000558 ORTHO05D003075 5.5e-06 54.7 75 40.0
QL93p2020_0031 Quercus lobata HOM05D000558 ORTHO05D003075 5.5e-06 54.7 75 40.0
Solyc10g078500.1 Solanum lycopersicum HOM05D000558 ORTHO05D003075 7.1e-06 54.3 75 41.3
THA.LOC104827258 Tarenaya hassleriana HOM05D000558 ORTHO05D003075 7.1e-06 54.3 75 41.3
Aa31LG11G11300 Aethionema arabicum HOM05D000558 ORTHO05D003075 9.3e-06 53.9 75 41.3
ClCG04G005220 Citrullus lanatus HOM05D000558 ORTHO05D003075 9.3e-06 53.9 75 40.0
Duzib106G1557 Durio zibethinus HOM05D000558 ORTHO05D003075 9.3e-06 53.9 105 34.3
Nitab4.5_0000001g0350 Nicotiana tabacum HOM05D000558 ORTHO05D003075 9.3e-06 53.9 75 38.7
Nitab4.5_0010699g0010 Nicotiana tabacum HOM05D000558 ORTHO05D003075 9.3e-06 53.9 75 40.0
Sed0009629 Sechium edule HOM05D000558 ORTHO05D003075 9.3e-06 53.9 72 41.7
unitig_0.g2408 Utricularia gibba HOM05D002780 ORTHO05D003254 9.3e-06 53.9 72 43.1


User provided reference genes

Program Settings