Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 6.8e-123 444.1 241 100.0
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.3e-110 403.3 241 88.0
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 4.7e-108 394.8 241 86.7
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 4.0e-107 391.7 241 86.7
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.8e-107 391.0 241 85.5
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 2.0e-106 389.4 241 84.6
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.6e-106 389.0 242 86.0
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.2e-105 386.0 241 85.9
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 3.7e-105 385.2 241 85.1
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.7e-105 385.2 242 85.1
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.1e-104 383.6 242 84.3
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.1e-104 383.6 243 84.8
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.8e-104 382.9 241 85.9
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 1.8e-104 382.9 241 85.9
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.2e-104 382.1 241 85.1
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 5.4e-104 381.3 242 84.7
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.2e-103 380.2 240 84.6
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.0e-103 379.4 241 83.4
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 7.8e-103 377.5 241 84.2
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 1.0e-102 377.1 241 83.0
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.0e-102 377.1 241 82.6
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.7e-102 376.3 241 83.4
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.3e-102 375.9 242 82.6
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.0e-102 374.8 244 83.2
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.1e-101 373.6 241 82.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.5e-101 373.2 241 82.2
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.5e-101 373.2 241 81.3
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 3.3e-101 372.1 241 82.6
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 9.5e-101 370.5 241 82.6
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 3.6e-100 368.6 241 81.3
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 4.7e-100 368.2 241 80.9
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 4.7e-100 368.2 241 80.5
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.8e-99 366.3 241 81.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.1e-99 365.5 241 80.9
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.5e-98 363.2 242 80.2
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.5e-98 363.2 241 80.5
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.4e-98 362.1 242 81.4
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 4.4e-98 361.7 242 80.2
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 4.4e-98 361.7 241 80.9
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.8e-98 361.3 242 80.6
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.8e-98 360.5 282 72.0
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 1.7e-97 359.8 239 82.0
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.7e-97 359.8 242 79.3
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 2.2e-97 359.4 242 79.8
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.2e-97 359.4 241 77.6
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.9e-97 359.0 242 78.5
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 3.7e-97 358.6 241 80.1
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 4.9e-97 358.2 244 78.7
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 4.9e-97 358.2 242 78.5
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 3.2e-96 355.5 242 76.4
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.1e-96 355.1 231 81.4
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 5.4e-96 354.8 220 84.5
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 9.2e-96 354.0 244 78.3
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.6e-95 353.2 239 80.8
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 4.6e-95 351.7 244 77.9
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 7.8e-95 350.9 238 79.4
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 7.8e-95 350.9 242 76.4
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.3e-94 350.1 238 78.6
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.3e-94 350.1 241 79.3
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 2.3e-94 349.4 242 75.6
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 3.0e-94 349.0 241 76.3
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.1e-93 347.1 241 75.5
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.5e-93 346.7 243 77.0
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 4.3e-93 345.1 270 69.6
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 4.3e-93 345.1 245 77.1
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 5.6e-93 344.7 241 75.5
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.8e-92 342.4 242 76.0
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 8.1e-92 340.9 222 83.3
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.1e-91 340.5 242 76.0
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.4e-91 340.1 241 74.3
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 3.1e-91 339.0 242 75.6
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 6.8e-91 337.8 241 73.4
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 1.2e-90 337.0 241 73.0
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 3.4e-90 335.5 241 72.6
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.4e-90 335.5 243 74.5
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 4.4e-90 335.1 228 77.6
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 5.8e-90 334.7 241 73.0
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 5.8e-90 334.7 241 73.0
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 5.8e-90 334.7 241 72.2
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 5.8e-90 334.7 281 68.3
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 5.8e-90 334.7 243 75.3
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.5e-90 334.3 221 81.4
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.3e-89 333.6 245 75.5
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 2.9e-89 332.4 241 72.2
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 4.9e-89 331.6 241 72.2
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 4.9e-89 331.6 241 72.6
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 4.9e-89 331.6 241 72.2
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.9e-89 331.6 243 73.7
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.9e-88 329.7 233 76.0
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 3.2e-88 328.9 223 79.4
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 3.2e-88 328.9 241 72.2
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.2e-88 328.9 244 72.1
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 5.4e-88 328.2 241 71.8
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 71.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.2e-87 327.0 197 88.8
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.6e-87 326.6 246 70.7
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.6e-87 326.6 290 63.1
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 3.5e-87 325.5 241 70.5
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 6.0e-87 324.7 242 71.9
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 6.0e-87 324.7 242 71.9
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.0e-86 323.9 196 87.2
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 72.4
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 5.1e-86 321.6 243 72.0
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 71.6
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.9e-85 319.7 244 70.9
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.9e-85 319.7 243 71.2
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 4.3e-85 318.5 196 84.7
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 7.3e-85 317.8 244 70.9
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.2e-84 317.0 258 69.8
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 3.6e-84 315.5 246 72.4
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 4.0e-83 312.0 240 70.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.2e-83 311.6 199 83.9
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 6.8e-83 311.2 199 83.4
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 6.8e-83 311.2 258 69.0
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.9e-83 310.8 196 83.7
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 1.2e-82 310.5 196 82.7
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.2e-82 310.5 199 82.9
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 2.0e-82 309.7 226 73.9
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 3.4e-82 308.9 196 84.2
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 3.4e-82 308.9 287 62.7
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.8e-82 308.1 199 82.9
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 5.8e-82 308.1 198 80.8
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 5.4e-80 301.6 196 82.1
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 5.4e-80 301.6 244 66.4
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 3.5e-79 298.9 244 65.6
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 4.7e-76 288.5 179 83.2
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.2e-74 283.9 203 75.4
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 5.4e-72 275.0 242 64.9
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.2e-71 273.9 196 73.5
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.2e-71 273.9 220 69.1
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 9.6e-69 264.2 175 80.6
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 4.9e-65 251.9 196 72.4
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 3.2e-64 249.2 188 69.7
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.3e-60 237.3 223 61.4
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 1.0e-54 217.6 155 75.5
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.9e-53 213.4 135 81.5
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 7.1e-48 194.9 155 65.8
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 9.6e-45 184.5 130 72.3
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 4.5e-42 175.6 169 60.4
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.8e-41 172.6 146 68.5
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.3e-40 167.9 149 62.4
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 2.0e-34 150.2 219 42.0
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.0e-33 147.9 223 46.2
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.5e-33 145.2 215 47.9
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 3.3e-29 132.9 205 37.6
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.8e-27 127.1 236 41.5
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 9.1e-27 124.8 217 36.4
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 4.5e-26 122.5 99 65.7
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 2.3e-22 110.2 77 75.3
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.1e-19 101.3 213 32.4
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 2.4e-19 100.1 215 33.5
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.5e-18 95.9 178 43.3
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.0e-17 94.7 63 79.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 5.2e-14 82.4 97 53.6
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 9.7e-13 78.2 64 68.8
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 6.5e-09 65.5 215 27.4
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 9.4e-08 61.6 41 82.9
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.6e-07 60.8 40 85.0
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 1.8e-06 57.4 89 47.2


User provided reference genes

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