Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 4.3e-203 711.4 453 100.0
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.2e-99 367.9 453 53.4
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 3.4e-99 366.3 460 48.9
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.9e-98 362.5 455 53.8
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 1.1e-97 361.3 481 55.9
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.2e-96 357.8 465 50.1
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 2.0e-96 357.1 459 53.8
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 2.1e-93 347.1 466 48.1
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 4.7e-93 345.9 468 50.0
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 4.7e-93 345.9 469 50.1
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.4e-92 344.4 471 52.4
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.4e-92 344.4 387 55.8
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 2.0e-91 340.5 458 50.0
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 4.9e-90 335.9 468 49.1
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 6.4e-90 335.5 484 51.2
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 8.3e-90 335.1 399 53.9
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 3.3e-86 323.2 460 50.9
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 7.3e-86 322.0 464 47.8
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.2e-85 321.2 468 45.5
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.2e-85 321.2 465 44.9
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 4.7e-85 319.3 378 53.2
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 3.1e-84 316.6 464 49.4
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 7.5e-83 312.0 454 45.8
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 9.8e-83 311.6 501 45.5
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.2e-82 310.5 454 46.7
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 5.4e-81 305.8 473 48.2
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 2.1e-80 303.9 361 50.4
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.7e-80 303.5 461 49.9
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 7.8e-80 302.0 454 44.9
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.7e-79 300.8 364 51.4
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 3.9e-79 299.7 388 49.2
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 8.6e-79 298.5 358 51.4
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.1e-78 298.1 382 51.3
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 7.3e-78 295.4 376 49.7
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 7.3e-78 295.4 376 49.7
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 7.3e-78 295.4 519 42.8
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-77 294.7 467 46.5
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.6e-77 294.3 453 43.3
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.1e-77 293.9 469 46.9
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 1.1e-76 291.6 474 48.1
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 2.3e-76 290.4 375 49.1
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 2.3e-76 290.4 385 48.8
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.2e-75 288.1 416 45.4
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 3.4e-75 286.6 539 41.9
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 3.4e-75 286.6 467 46.5
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 6.4e-74 282.3 378 47.4
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 8.3e-74 282.0 373 49.9
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-73 281.2 446 41.9
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.4e-73 281.2 478 45.6
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.9e-73 280.8 385 48.3
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 7.1e-73 278.9 311 53.1
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.2e-72 278.1 480 44.6
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 3.5e-72 276.6 453 41.7
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 4.6e-72 276.2 451 41.7
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 7.8e-72 275.4 449 41.6
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 7.8e-72 275.4 447 43.0
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.0e-71 275.0 447 43.0
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.0e-71 275.0 480 45.0
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.3e-71 274.6 454 45.2
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 5.1e-71 272.7 458 45.4
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 6.6e-71 272.3 480 44.6
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.3e-70 270.0 358 46.9
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 3.3e-70 270.0 461 44.7
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 5.6e-70 269.2 356 48.3
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 9.5e-70 268.5 447 42.7
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.2e-69 268.1 450 45.1
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 1.2e-69 268.1 446 41.7
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.2e-69 268.1 447 42.5
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.2e-69 268.1 390 47.2
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 2.1e-69 267.3 358 47.8
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 4.7e-69 266.2 458 41.9
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.2e-69 265.8 365 47.9
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.4e-68 263.8 388 44.1
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 3.1e-68 263.5 387 45.5
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 5.2e-68 262.7 384 46.9
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 6.8e-68 262.3 463 45.1
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.2e-67 261.5 362 48.1
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.2e-67 261.5 362 48.1
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 2.0e-67 260.8 457 44.6
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.6e-67 260.4 466 41.6
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 4.4e-67 259.6 621 38.0
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 5.8e-67 259.2 345 47.0
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 9.9e-67 258.5 363 47.9
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.3e-66 258.1 380 45.5
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.3e-66 258.1 449 40.5
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.7e-66 257.7 363 47.4
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.9e-66 256.9 379 45.4
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 3.8e-66 256.5 357 46.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 4.9e-66 256.1 510 42.5
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-65 255.0 364 47.8
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.1e-65 255.0 362 46.4
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.4e-65 254.6 376 50.0
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 3.2e-65 253.4 389 43.4
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 9.2e-65 251.9 379 53.3
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.2e-64 251.5 472 41.9
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.2e-64 251.5 398 45.2
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 2.1e-64 250.8 361 47.9
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.7e-64 250.4 394 43.4
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 1.7e-63 247.7 370 44.3
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.9e-63 246.5 359 44.6
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 3.9e-63 246.5 364 46.2
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 8.7e-63 245.4 272 55.5
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-62 245.0 392 43.9
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.5e-62 243.8 369 44.4
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 3.3e-62 243.4 440 44.1
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 7.3e-62 242.3 364 42.6
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 9.6e-62 241.9 392 43.6
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 9.6e-62 241.9 359 44.8
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 9.6e-62 241.9 381 42.8
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.2e-61 241.5 359 44.6
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.6e-61 241.1 406 44.3
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 8.1e-61 238.8 388 43.3
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.2e-59 235.0 365 44.4
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.5e-59 234.6 382 42.1
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 4.4e-59 233.0 376 41.5
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 2.4e-57 227.3 361 42.4
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 3.2e-57 226.9 354 42.7
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 9.3e-57 225.3 328 46.0
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 7.8e-56 222.2 297 47.1
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.5e-54 218.0 367 43.1
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.6e-53 214.5 386 41.2
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 3.6e-53 213.4 389 39.3
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 6.2e-53 212.6 423 37.4
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.0e-51 207.6 133 78.9
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.6e-51 207.2 445 37.1
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.6e-51 207.2 445 37.1
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.1e-49 201.8 413 39.7
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.3e-47 194.9 275 48.4
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.1e-47 193.0 113 86.7
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.0e-44 183.3 300 41.7
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.0e-44 183.3 117 77.8
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.0e-44 183.3 117 77.8
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 8.4e-42 175.6 206 51.0
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 8.4e-42 175.6 101 85.1
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 1.8e-39 167.9 117 75.2
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 5.3e-36 156.4 95 81.1
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 4.9e-34 149.8 138 55.8
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 7.9e-32 142.5 78 89.7
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.3e-31 141.7 140 53.6
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 6.7e-31 139.4 300 39.0
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.8e-29 134.0 262 37.8
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 5.3e-28 129.8 291 38.8
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 9.4e-25 119.0 301 34.2
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.0e-23 115.5 64 87.5
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 6.7e-23 112.8 113 54.9
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.0e-22 111.3 218 39.9
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 4.5e-19 100.1 67 77.6
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 2.5e-17 94.4 106 49.1
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-16 92.0 65 70.8
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.6e-16 91.7 190 37.4
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 7.9e-16 89.4 88 53.4
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.0e-15 89.0 61 68.9
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 8.8e-15 85.9 105 46.7
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 6.3e-13 79.7 105 48.6
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 6.3e-13 79.7 267 40.4
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.3e-10 72.0 34 94.1
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 4.7e-08 63.5 105 37.1
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 8.0e-08 62.8 34 76.5
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 6.7e-07 59.7 54 53.7
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 8.8e-07 59.3 67 49.3
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.5e-06 58.5 77 44.2
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 7.4e-06 56.2 105 32.4


User provided reference genes

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