Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1446 Punica granatum HOM05D008407 ORTHO05D008048 2.1e-74 282.3 148 100.0
QL06p031965 Quercus lobata HOM05D008407 ORTHO05D008048 7.5e-24 114.4 139 47.5
Haze_25045 Corylus avellana HOM05D008407 ORTHO05D008048 2.7e-21 105.9 159 43.4
Lj4g0011503 Lotus japonicus HOM05D008407 ORTHO05D008048 7.8e-21 104.4 149 40.3
Haze_25053 Corylus avellana HOM05D008407 ORTHO05D008048 2.3e-20 102.8 159 42.1
TPR.G2192 Trifolium pratense HOM05D008407 ORTHO05D008048 1.1e-17 94.0 151 39.1
ClCG01G016050 Citrullus lanatus HOM05D008407 ORTHO05D008048 1.8e-17 93.2 110 40.0
FAN28G0580 Fragaria x ananassa HOM05D008407 ORTHO05D008048 5.2e-17 91.7 146 39.0
FvH4_1g22760 Fragaria vesca HOM05D008407 ORTHO05D008048 1.2e-16 90.5 147 39.5
FAN19G0490 Fragaria x ananassa HOM05D008407 ORTHO05D008048 1.2e-16 90.5 147 39.5
FAN26G1845 Fragaria x ananassa HOM05D008407 ORTHO05D008048 1.2e-16 90.5 147 39.5
FAN23G0665 Fragaria x ananassa HOM05D008407 ORTHO05D008048 2.0e-16 89.7 146 37.7
Gohir.A02G135700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 1.3e-15 87.0 138 39.1
Psat7g050960 Pisum sativum HOM05D008407 ORTHO05D008048 2.2e-15 86.3 142 39.4
RcHm_v2.0_Chr2g0117081 Rosa chinensis HOM05D008407 ORTHO05D008048 4.9e-15 85.1 142 37.3
TWI79G0560 Tripterygium wilfordii HOM05D008407 ORTHO05D008048 4.9e-15 85.1 143 39.2
Duzib147G1678 Durio zibethinus HOM05D008407 ORTHO05D008048 1.9e-14 83.2 150 38.7
Cfa002761 Carpinus fangiana HOM05D008407 ORTHO05D008048 4.1e-14 82.0 146 39.0
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 2.7e-13 79.3 104 41.3
COL.COLO4_03583 Corchorus olitorius HOM05D008407 ORTHO05D008048 2.7e-13 79.3 132 37.9
Medtr8g091950 Medicago truncatula HOM05D008407 ORTHO05D008048 3.5e-13 79.0 110 40.0
Prupe.6G170400 Prunus persica HOM05D008407 ORTHO05D008048 6.0e-13 78.2 135 37.8
CiPaw.03G133800 Carya illinoinensis HOM05D008407 ORTHO05D008048 1.0e-12 77.4 114 40.4
Cpa.g.sc145.13 Carica papaya HOM05D008407 ORTHO05D008048 1.3e-12 77.0 145 39.3
arahy.Tifrunner.gnm1.ann1.80DI5I Arachis hypogaea HOM05D008407 ORTHO05D008048 3.9e-12 75.5 104 40.4
Manes.13G079700 Manihot esculenta HOM05D008407 ORTHO05D008048 5.1e-12 75.1 142 36.6
MD01G1020600 Malus domestica HOM05D008407 ORTHO05D008048 6.6e-12 74.7 154 35.7
Sabra05G0069800 Salix brachista HOM05D008407 ORTHO05D008048 1.1e-11 73.9 145 37.9
Ciclev10026701m.g Citrus clementina HOM05D008407 ORTHO05D008048 5.6e-11 71.6 152 34.2
Glyma.05G184300 Glycine max HOM05D008407 ORTHO05D008048 5.6e-11 71.6 112 36.6
Thecc.01G114300 Theobroma cacao HOM05D008407 ORTHO05D008048 9.5e-11 70.9 154 33.8
Dinv19478 Davidia involucrata HOM05D008407 ORTHO05D008048 1.2e-10 70.5 152 36.2
CsaV3_6G042330 Cucumis sativus L. HOM05D008407 ORTHO05D008048 2.1e-10 69.7 82 42.7
Duzib187G2009 Durio zibethinus HOM05D008407 ORTHO05D008048 4.7e-10 68.6 153 32.0
Sed0000570 Sechium edule HOM05D008407 ORTHO05D008048 4.7e-10 68.6 114 38.6
Gohir.D03G046566 Gossypium hirsutum HOM05D008407 ORTHO05D008048 6.2e-10 68.2 134 33.6
Gorai.003G047700 Gossypium raimondii HOM05D008407 ORTHO05D008048 6.2e-10 68.2 134 33.6
Thhalv10008985m.g Eutrema salsugineum HOM05D009551 ORTHO05D008048 2.4e-09 66.2 94 43.6
COL.COLO4_11001 Corchorus olitorius HOM05D008407 ORTHO05D008048 3.1e-09 65.9 129 31.8
CANSAT01G0822 Cannabis sativa HOM05D008407 ORTHO05D008048 4.0e-09 65.5 105 38.1
Hma1.2p1_0375F.1_g138780 Hydrangea macrophylla HOM05D008407 ORTHO05D008048 4.0e-09 65.5 122 38.5
PGSC0003DMG400031207 Solanum tuberosum HOM05D017188 ORTHO05D008048 4.0e-09 65.5 132 35.6
BcaB02g09833 Brassica carinata HOM05D011184 ORTHO05D008048 1.2e-08 63.9 143 35.7
BcaC07g41453 Brassica carinata HOM05D009551 ORTHO05D008048 1.2e-08 63.9 104 40.4
Phvul.002G265200 Phaseolus vulgaris HOM05D008407 ORTHO05D008048 1.5e-08 63.5 98 37.8
BcaC05g25541 Brassica carinata HOM05D009551 ORTHO05D008048 3.4e-08 62.4 95 44.2
C05p15070 Brassica napus HOM05D009551 ORTHO05D008048 3.4e-08 62.4 95 44.2
BolC5t30222H Brassica oleracea HOM05D009551 ORTHO05D008048 3.4e-08 62.4 95 44.2
Lalb_Chr07g0184781 Lupinus albus HOM05D008407 ORTHO05D008048 5.8e-08 61.6 151 29.8
BolC8t51968H Brassica oleracea HOM05D009551 ORTHO05D008048 9.9e-08 60.8 104 39.4
Nitab4.5_0004378g0030 Nicotiana tabacum HOM05D017188 ORTHO05D008048 1.7e-07 60.1 111 36.9
CARHR278830 Cardamine hirsuta HOM05D011184 ORTHO05D008048 2.2e-07 59.7 140 36.4
MBI02_g10678_MAGBIO Magnolia biondii HOM05D017078 ORTHO05D018417 2.2e-07 59.7 136 36.8
Prupe.3G021100 Prunus persica HOM05D019125 ORTHO05D022577 3.8e-07 58.9 100 45.0
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 4.9e-07 58.5 142 32.4
BcaB02g06671 Brassica carinata HOM05D009551 ORTHO05D008048 4.9e-07 58.5 104 39.4
A06p12760 Brassica napus HOM05D009551 ORTHO05D008048 4.9e-07 58.5 74 47.3
A09p60720 Brassica napus HOM05D009551 ORTHO05D008048 4.9e-07 58.5 104 38.5
C08p44220 Brassica napus HOM05D009551 ORTHO05D008048 4.9e-07 58.5 117 36.8
BraA06t24436Z Brassica rapa HOM05D009551 ORTHO05D008048 4.9e-07 58.5 74 47.3
arahy.Tifrunner.gnm1.ann1.FI1JAT Arachis hypogaea HOM05D008407 ORTHO05D008048 6.4e-07 58.2 139 30.9
Carub.0001s1659 Capsella rubella HOM05D009551 ORTHO05D008048 8.4e-07 57.8 128 35.2
MELO3C007475.2 Cucumis melo HOM05D008407 ORTHO05D008048 8.4e-07 57.8 82 35.4
AT1G16850 Arabidopsis thaliana HOM05D009551 ORTHO05D008048 1.1e-06 57.4 128 34.4
Sp2g27900 Schrenkiella parvula HOM05D011184 ORTHO05D008048 1.1e-06 57.4 144 32.6
Manes.14G007700 Manihot esculenta HOM05D009551 ORTHO05D008048 1.4e-06 57.0 95 42.1
Carub.0008s2565 Capsella rubella HOM05D011184 ORTHO05D008048 1.9e-06 56.6 150 35.3
AL8G42300 Arabidopsis lyrata HOM05D011184 ORTHO05D008048 2.4e-06 56.2 112 36.6
arahy.Tifrunner.gnm1.ann1.18RYE7 Arachis hypogaea HOM05D008407 ORTHO05D008048 2.4e-06 56.2 143 28.7
Gorai.007G244900 Gossypium raimondii HOM05D008407 ORTHO05D008048 2.4e-06 56.2 99 33.3
Nitab4.5_0000818g0160 Nicotiana tabacum HOM05D017188 ORTHO05D008048 2.4e-06 56.2 106 34.9
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 4.2e-06 55.5 113 35.4
C03p61340 Brassica napus HOM05D011184 ORTHO05D008048 4.2e-06 55.5 113 35.4
Potri.005G085000 Populus trichocarpa HOM05D008407 ORTHO05D008048 4.2e-06 55.5 109 33.9
Gohir.D11G231800 Gossypium hirsutum HOM05D008407 ORTHO05D008048 5.4e-06 55.1 99 32.3
Lj3g0024474 Lotus japonicus HOM05D014935 ORTHO05D008048 5.4e-06 55.1 134 34.3
BolC3t18394H Brassica oleracea HOM05D011184 ORTHO05D008048 7.1e-06 54.7 113 35.4
Potri.010G252700 Populus trichocarpa HOM05D009551 ORTHO05D008048 7.1e-06 54.7 79 36.7
THA.LOC104799297 Tarenaya hassleriana HOM05D011184 ORTHO05D008048 7.1e-06 54.7 148 31.1


User provided reference genes

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