Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 9.4e-152 540.0 251 100.0
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 2.0e-130 469.2 250 85.6
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 7.8e-130 467.2 259 81.5
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.9e-129 464.9 253 83.0
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.9e-129 464.9 241 85.9
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 5.0e-129 464.5 252 83.3
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 5.0e-129 464.5 244 85.7
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.1e-128 463.4 246 83.7
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.5e-128 463.0 244 85.7
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.1e-127 459.1 251 81.3
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 2.8e-127 458.8 245 84.1
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 3.6e-127 458.4 254 81.5
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 4.7e-127 458.0 244 86.1
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.7e-127 458.0 245 85.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 4.7e-127 458.0 249 83.1
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 8.0e-127 457.2 252 82.9
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 4.0e-126 454.9 237 84.4
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 4.0e-126 454.9 251 80.9
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 4.0e-126 454.9 249 81.5
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.0e-126 454.9 240 85.8
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 4.0e-126 454.9 238 86.6
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 8.9e-126 453.8 243 83.5
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 1.2e-125 453.4 249 81.5
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.2e-125 453.4 235 87.2
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 1.5e-125 453.0 249 81.1
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 2.6e-125 452.2 246 82.5
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 2.6e-125 452.2 230 87.8
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.6e-125 452.2 252 80.6
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 3.4e-125 451.8 254 79.9
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.4e-125 451.8 235 86.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 4.4e-125 451.4 250 80.0
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.5e-125 450.7 252 80.2
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.3e-124 449.9 252 80.2
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.7e-124 449.5 234 85.5
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.2e-124 449.1 254 78.7
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.2e-124 449.1 243 82.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.2e-124 449.1 254 80.3
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 3.7e-124 448.4 229 86.0
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 4.9e-124 448.0 242 82.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.9e-124 448.0 256 80.1
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 4.9e-124 448.0 231 85.3
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 6.4e-124 447.6 237 84.4
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 8.3e-124 447.2 242 82.6
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.9e-123 446.0 240 82.5
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 7.0e-123 444.1 246 81.7
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 7.0e-123 444.1 235 83.4
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 7.0e-123 444.1 237 81.4
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 9.2e-123 443.7 250 78.8
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.2e-122 443.4 238 81.1
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 1.2e-122 443.4 247 78.9
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.6e-122 443.0 250 78.0
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.6e-122 443.0 245 80.8
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.0e-122 442.6 241 80.5
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.5e-122 441.8 248 79.8
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.5e-122 441.8 241 81.7
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.6e-122 441.4 230 83.0
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 6.0e-122 441.0 248 79.0
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 7.8e-122 440.7 243 79.0
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.3e-121 439.9 243 79.4
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.3e-121 439.9 251 77.7
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 1.7e-121 439.5 240 81.2
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 2.3e-121 439.1 248 79.4
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.3e-121 439.1 235 82.1
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 3.0e-121 438.7 240 80.0
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 3.0e-121 438.7 247 78.1
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 3.9e-121 438.3 240 78.8
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 3.9e-121 438.3 249 78.7
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.9e-121 438.3 240 79.6
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 3.9e-121 438.3 252 77.8
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 5.0e-121 438.0 237 79.7
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 5.0e-121 438.0 245 80.0
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 6.6e-121 437.6 245 79.2
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 6.6e-121 437.6 248 79.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 6.6e-121 437.6 236 81.8
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 6.6e-121 437.6 235 80.0
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 6.6e-121 437.6 239 80.3
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 8.6e-121 437.2 229 83.0
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 8.6e-121 437.2 238 80.7
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.1e-120 436.8 245 79.2
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.5e-120 436.4 233 82.4
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.9e-120 436.0 252 77.0
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.5e-120 435.6 247 79.4
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 2.5e-120 435.6 234 82.1
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 3.3e-120 435.3 233 81.5
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 4.3e-120 434.9 237 79.7
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 5.6e-120 434.5 240 77.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 7.3e-120 434.1 245 78.4
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.6e-119 433.0 247 78.1
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.6e-119 433.0 233 81.1
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.6e-119 433.0 237 80.2
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.1e-119 432.6 249 76.7
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 2.1e-119 432.6 246 79.3
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 2.1e-119 432.6 234 82.1
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.1e-119 432.6 241 78.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 2.1e-119 432.6 236 80.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.1e-119 432.6 243 79.8
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.1e-119 432.6 233 81.5
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 2.8e-119 432.2 247 76.5
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 4.7e-119 431.4 241 78.8
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.7e-119 431.4 240 78.8
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 8.0e-119 430.6 241 78.0
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.8e-118 429.5 244 78.7
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.3e-118 429.1 234 81.6
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.0e-118 428.3 227 81.9
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 4.0e-118 428.3 230 80.0
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 8.9e-118 427.2 250 77.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 4.4e-117 424.9 250 76.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 5.8e-117 424.5 250 76.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 5.8e-117 424.5 250 76.8
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.3e-116 423.3 248 77.0
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.7e-116 422.9 233 79.0
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.9e-116 422.2 236 78.8
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.9e-116 422.2 241 79.3
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.9e-116 422.2 241 79.3
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 4.9e-116 421.4 244 75.8
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-115 420.2 244 75.0
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.4e-115 419.9 241 78.8
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 2.4e-115 419.1 237 76.8
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 4.1e-115 418.3 232 79.3
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 4.1e-115 418.3 227 80.6
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 9.2e-115 417.2 245 76.3
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 9.2e-115 417.2 227 81.9
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.2e-114 416.8 237 76.4
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-114 416.8 233 78.1
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 2.1e-114 416.0 237 75.9
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 2.7e-114 415.6 246 74.8
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 7.8e-114 414.1 227 78.4
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.0e-113 413.7 227 79.7
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.3e-113 413.3 227 78.4
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.3e-113 413.3 227 78.4
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.3e-113 413.3 229 77.7
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.7e-113 412.9 233 77.7
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 3.0e-113 412.1 234 75.6
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 6.6e-113 411.0 234 77.4
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 8.6e-113 410.6 236 76.7
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.5e-112 409.1 250 72.8
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 4.3e-112 408.3 234 77.4
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 4.4e-109 398.3 238 71.8
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.1e-107 393.7 226 76.1
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.1e-107 393.7 227 74.4
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.4e-107 393.3 230 76.5
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.9e-107 392.9 232 76.3
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 8.9e-102 374.0 198 82.8
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.5e-98 362.1 228 68.9
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 7.8e-98 360.9 223 70.9
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.0e-97 359.0 247 66.0
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 7.3e-96 354.4 227 67.8
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 9.6e-96 354.0 246 64.6
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 6.9e-94 347.8 238 64.3
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 6.9e-94 347.8 243 65.8
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.1e-91 340.5 236 66.1
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 4.5e-85 318.5 178 81.5
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 7.6e-85 317.8 159 87.4
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.6e-82 310.1 230 62.2
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 6.0e-82 308.1 158 88.0
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 2.4e-62 243.0 164 65.2
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.0e-53 213.4 218 46.3
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.5e-53 212.2 245 45.7
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 6.7e-49 198.4 215 50.7
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 4.0e-41 172.6 89 87.6
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.2e-32 144.4 107 65.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 2.2e-28 130.2 116 56.0
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.1e-26 123.6 135 48.9
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 1.7e-15 87.4 51 66.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 3.0e-12 76.6 66 56.1


User provided reference genes

Program Settings