Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 1.5e-178 629.4 316 100.0
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 1.3e-126 456.8 318 73.0
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 4.9e-121 438.3 327 68.5
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 1.1e-120 437.2 316 69.6
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 3.1e-115 419.1 318 67.6
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 2.0e-114 416.4 255 77.3
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 7.5e-114 414.5 317 66.6
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 4.9e-113 411.8 308 68.2
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 1.1e-112 410.6 317 67.5
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 1.2e-111 407.1 304 65.8
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 3.5e-111 405.6 317 66.2
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 4.6e-111 405.2 316 67.1
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 6.0e-111 404.8 316 66.5
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 7.8e-111 404.4 321 66.7
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 3.0e-110 402.5 316 64.6
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.9e-109 399.8 315 61.6
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 3.3e-109 399.1 315 65.7
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 3.3e-109 399.1 328 63.4
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 1.6e-108 396.7 311 65.9
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 1.6e-108 396.7 320 66.2
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 2.1e-108 396.4 320 65.0
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 2.1e-108 396.4 320 65.0
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 3.6e-108 395.6 320 64.7
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 3.6e-108 395.6 315 65.4
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 3.6e-108 395.6 331 61.9
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 6.2e-108 394.8 320 64.4
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 6.2e-108 394.8 318 64.8
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 4.0e-107 392.1 329 63.2
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 5.2e-107 391.7 320 64.7
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 1.2e-106 390.6 319 64.9
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 4.4e-106 388.7 315 62.5
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 7.5e-106 387.9 321 63.9
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 9.8e-106 387.5 320 64.7
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 9.8e-106 387.5 327 61.5
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 1.3e-105 387.1 314 65.6
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.7e-105 386.7 321 62.9
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 2.9e-105 386.0 314 65.3
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 8.3e-105 384.4 321 63.2
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 2.4e-104 382.9 317 63.7
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 2.4e-104 382.9 277 65.7
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 4.1e-104 382.1 321 59.5
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 7.1e-104 381.3 317 64.4
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 1.2e-103 380.6 336 59.8
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.5e-103 379.0 313 64.2
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 4.6e-103 378.6 319 63.6
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 6.0e-103 378.3 317 63.7
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 6.0e-103 378.3 315 63.8
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 6.0e-103 378.3 319 63.6
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 7.8e-103 377.9 316 62.0
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 1.0e-102 377.5 317 63.7
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 1.0e-102 377.5 317 63.7
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.3e-102 377.1 255 73.3
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 5.1e-102 375.2 317 63.4
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 8.6e-102 374.4 319 57.7
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 4.3e-101 372.1 315 61.9
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 4.3e-101 372.1 316 61.7
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 1.6e-100 370.2 320 61.9
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 2.8e-100 369.4 329 57.8
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 3.6e-100 369.0 318 63.8
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 4.7e-100 368.6 297 62.0
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 8.1e-100 367.9 315 61.3
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 8.1e-100 367.9 274 66.4
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 1.8e-99 366.7 314 61.1
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 5.2e-99 365.2 340 56.2
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 1.5e-98 363.6 321 58.9
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 1.5e-98 363.6 338 58.3
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 2.6e-98 362.8 315 61.0
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 7.6e-98 361.3 327 58.1
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 1.7e-97 360.1 318 60.4
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 3.7e-97 359.0 318 60.1
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 1.1e-96 357.5 325 58.5
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 1.1e-96 357.5 279 64.5
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 1.4e-96 357.1 320 60.3
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 2.4e-96 356.3 318 60.1
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 4.1e-96 355.5 318 56.6
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 6.0e-95 351.7 324 59.6
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 6.0e-95 351.7 304 60.5
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 7.8e-95 351.3 327 57.2
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 3.0e-94 349.4 252 66.7
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 3.9e-94 349.0 241 68.5
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 1.5e-93 347.1 324 59.0
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 1.5e-93 347.1 261 65.1
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 1.9e-93 346.7 317 58.0
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 7.3e-93 344.7 332 57.5
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 9.6e-93 344.4 383 49.1
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 1.2e-92 344.0 321 61.1
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 2.8e-92 342.8 299 57.2
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 3.1e-91 339.3 325 55.4
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 8.9e-91 337.8 323 54.8
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 1.2e-90 337.4 324 54.9
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 3.4e-90 335.9 423 49.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 2.9e-89 332.8 222 68.0
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 6.0e-87 325.1 268 63.8
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 8.7e-86 321.2 241 62.7
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 3.8e-81 305.8 319 53.6
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 1.6e-79 300.4 320 52.5
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 3.5e-79 299.3 271 54.6
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 1.1e-77 294.3 244 57.8
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 3.2e-72 276.2 258 51.2
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 1.8e-70 270.4 246 60.2
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 1.8e-67 260.4 162 77.2
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 2.6e-66 256.5 314 48.4
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.8e-60 236.5 243 52.3
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 4.5e-58 229.2 302 42.4
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 3.8e-57 226.1 247 46.6
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 3.8e-57 226.1 274 45.6
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 1.4e-56 224.2 308 41.9
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 7.9e-55 218.4 268 48.1
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 1.0e-49 201.4 130 71.5
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 7.9e-47 191.8 193 54.4
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 3.9e-46 189.5 155 65.2
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 6.3e-44 182.2 155 63.9
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 6.9e-43 178.7 156 63.5
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 2.8e-36 156.8 157 60.5
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 4.1e-35 152.9 91 78.0
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 2.2e-33 147.1 155 58.1
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 8.5e-33 145.2 132 60.6
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 3.0e-30 136.7 105 61.0
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 3.3e-29 133.3 149 45.0
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 6.3e-28 129.0 75 77.3
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 9.1e-27 125.2 132 53.0
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 1.7e-25 120.9 133 50.4
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 1.1e-24 118.2 76 73.7
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 1.8e-22 110.9 261 29.1
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 5.7e-21 105.9 103 48.5
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 7.5e-21 105.5 114 48.2
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 1.4e-19 101.3 78 59.0
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 3.5e-18 96.7 284 26.4
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.9e-16 90.9 108 52.8
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.5e-16 90.5 108 51.9
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.6e-15 87.8 101 52.5
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.6e-15 87.8 64 67.2
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.1e-15 87.4 67 64.2
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.0e-14 85.1 64 65.6
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.0e-14 85.1 139 40.3
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 4.0e-14 83.2 193 31.1
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 4.0e-14 83.2 236 28.4
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 1.1e-11 75.1 246 26.4
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 1.8e-11 74.3 242 27.7
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 4.1e-11 73.2 246 27.2
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 5.4e-11 72.8 236 27.5
CsaV3_4G013250 Cucumis sativus L. HOM05D006013 ORTHO05D007383 5.4e-11 72.8 236 27.5
Sed0009892 Sechium edule HOM05D006013 ORTHO05D007383 7.0e-11 72.4 235 26.8
THA.LOC104820775 Tarenaya hassleriana HOM05D006013 ORTHO05D007383 9.1e-11 72.0 326 24.8
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 1.2e-10 71.6 253 27.7
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 3.5e-10 70.1 244 25.8
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 5.9e-10 69.3 237 25.3
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 3.8e-09 66.6 256 26.2
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 5.0e-09 66.2 61 59.0
Hma1.2p1_0152F.1_g067630 Hydrangea macrophylla HOM05D006013 ORTHO05D007383 5.0e-09 66.2 311 26.7
Nitab4.5_0000394g0050 Nicotiana tabacum HOM05D006013 ORTHO05D007383 6.6e-09 65.9 332 25.9
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 8.6e-09 65.5 244 23.8
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 8.6e-09 65.5 307 26.4
Thecc.05G250300 Theobroma cacao HOM05D006013 ORTHO05D007383 1.1e-08 65.1 250 24.8
QL07p018334 Quercus lobata HOM05D006013 ORTHO05D007383 2.5e-08 63.9 238 24.4
FvH4_6g36141 Fragaria vesca HOM05D002283 ORTHO05D005725 3.3e-08 63.5 82 50.0
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 5.6e-08 62.8 116 40.5
HPP92_018481 Vanilla planifolia HOM05D006013 ORTHO05D007383 5.6e-08 62.8 280 26.1
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 7.2e-08 62.4 256 26.2
Cpa.g.sc51.125 Carica papaya HOM05D006013 ORTHO05D007383 8.0e-07 58.9 246 24.8
HanXRQChr03g0090471 Helianthus annuus HOM05D006013 ORTHO05D007383 1.8e-06 57.8 255 23.9


User provided reference genes

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