Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.6e-89 332.0 170 100.0
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 6.8e-61 237.7 166 74.7
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 3.4e-60 235.3 168 73.8
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 8.3e-59 230.7 172 73.8
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 2.3e-56 222.6 173 69.9
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.8e-56 221.9 166 72.3
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 5.0e-56 221.5 170 74.1
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.0e-56 221.5 175 70.9
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 6.6e-56 221.1 172 69.2
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 8.6e-56 220.7 173 69.4
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.6e-56 220.7 175 70.3
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.1e-55 220.3 171 70.2
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.1e-55 220.3 171 70.2
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-55 220.3 174 69.5
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.5e-55 219.9 166 72.9
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.5e-55 219.9 170 69.4
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 4.3e-55 218.4 186 66.1
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 9.5e-55 217.2 179 66.5
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 9.5e-55 217.2 168 69.0
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 2.1e-54 216.1 177 70.1
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.0e-53 213.8 184 65.8
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.0e-53 213.8 184 65.8
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.8e-53 213.0 169 69.2
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.8e-53 213.0 172 67.4
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.0e-53 212.2 185 67.6
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.0e-53 212.2 170 68.8
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 4.0e-53 211.8 175 68.6
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.0e-53 211.8 169 71.0
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 5.2e-53 211.5 183 65.6
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 6.8e-53 211.1 184 64.7
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 6.8e-53 211.1 174 66.7
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 8.9e-53 210.7 185 64.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 8.9e-53 210.7 173 68.8
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.5e-52 209.9 167 65.9
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 3.4e-52 208.8 166 67.5
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 4.4e-52 208.4 173 66.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.4e-52 208.4 173 67.1
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 7.5e-52 207.6 189 64.6
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 7.5e-52 207.6 170 67.1
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 9.8e-52 207.2 180 68.3
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.7e-51 206.5 175 66.3
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.7e-51 206.5 175 68.0
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.9e-51 205.7 171 67.3
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.9e-51 205.7 175 69.1
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.9e-51 205.7 183 62.3
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 3.7e-51 205.3 180 65.6
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.1e-50 203.8 173 66.5
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.1e-50 203.8 169 68.6
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.4e-50 203.4 172 66.3
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.4e-50 203.4 172 66.3
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.8e-50 203.0 178 64.0
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.8e-50 203.0 167 65.9
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.8e-50 203.0 163 68.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.4e-50 202.6 179 64.2
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.4e-50 202.6 167 65.3
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.4e-50 202.6 199 57.8
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.1e-50 201.8 179 64.2
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 4.1e-50 201.8 132 78.8
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 5.4e-50 201.4 187 61.5
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.4e-50 201.4 171 64.9
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.0e-50 201.1 167 65.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 7.0e-50 201.1 181 63.5
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.0e-50 201.1 170 68.2
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.0e-50 201.1 170 68.2
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.0e-50 201.1 170 68.2
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 7.0e-50 201.1 169 66.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 9.2e-50 200.7 178 65.2
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 9.2e-50 200.7 167 64.7
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 9.2e-50 200.7 163 67.5
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.2e-49 200.3 178 64.6
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.2e-49 200.3 170 64.1
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.0e-49 199.5 192 59.9
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.7e-49 199.1 175 64.0
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.7e-49 199.1 181 58.6
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 3.5e-49 198.7 176 65.9
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.5e-49 198.7 176 65.9
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 4.6e-49 198.4 168 66.1
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 4.6e-49 198.4 178 62.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.7e-48 196.4 179 63.1
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.7e-48 196.4 176 61.4
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.3e-48 196.1 179 63.1
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.3e-48 196.1 179 63.1
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.0e-48 194.9 187 61.0
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.9e-47 193.0 189 58.7
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.9e-47 193.0 170 61.8
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.3e-47 192.2 178 64.6
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 4.3e-47 191.8 175 62.9
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.3e-47 191.8 175 63.4
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 5.6e-47 191.4 177 63.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 5.6e-47 191.4 176 63.6
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 5.6e-47 191.4 146 71.2
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 7.3e-47 191.0 175 63.4
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.6e-46 189.9 137 73.0
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.6e-46 188.7 165 59.4
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 3.6e-46 188.7 166 63.3
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 4.7e-46 188.3 183 61.2
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.0e-45 187.2 175 61.7
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.3e-45 186.0 186 57.5
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 5.2e-45 184.9 176 59.7
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 5.2e-45 184.9 199 55.8
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.5e-44 183.3 175 60.0
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.5e-44 183.3 175 60.0
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 2.0e-44 183.0 180 59.4
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 4.4e-44 181.8 178 59.0
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.3e-43 180.3 202 55.0
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 2.9e-43 179.1 184 57.6
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 8.3e-43 177.6 169 57.4
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.4e-42 176.8 172 58.7
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.1e-42 175.3 167 61.1
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 4.1e-42 175.3 152 64.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 2.7e-41 172.6 191 54.5
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.3e-40 170.2 164 61.0
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.6e-40 167.9 108 77.8
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 4.0e-37 158.7 148 64.9
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.2e-35 152.9 175 54.9
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.1e-34 150.6 149 56.4
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 5.4e-34 148.3 188 46.3
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.6e-33 146.7 185 47.0
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.6e-33 146.7 91 80.2
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.7e-32 143.3 145 59.3
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 6.6e-32 141.4 130 59.2
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 4.3e-31 138.7 143 60.8
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 7.6e-28 127.9 124 56.5
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.7e-27 126.7 108 59.3
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 3.8e-27 125.6 107 58.9
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 8.4e-27 124.4 131 57.3
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 4.1e-26 122.1 119 57.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 7.1e-26 121.3 101 62.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.6e-25 120.2 101 61.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 6.0e-25 118.2 101 64.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.3e-24 117.1 114 62.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.1e-24 115.2 168 45.2
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.1e-23 114.0 102 60.8
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.1e-23 114.0 115 53.0
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.3e-23 112.1 107 53.3
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.8e-21 106.7 100 56.0
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.2e-20 104.0 116 52.6
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 2.0e-20 103.2 110 50.9
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.4e-20 102.1 82 62.2
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 2.2e-19 99.8 121 49.6
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.9e-19 99.4 64 81.2
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.9e-19 99.4 108 52.8
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.4e-19 97.8 96 62.5
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.1e-18 97.4 67 76.1
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.9e-18 96.7 82 57.3
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.6e-17 93.6 81 60.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.5e-17 92.4 75 58.7
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 6.0e-17 91.7 98 46.9
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 5.1e-16 88.6 115 44.3
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.5e-15 87.0 94 51.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 7.3e-15 84.7 133 47.4
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 7.9e-09 64.7 144 32.6


User provided reference genes

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