Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 9.0e-74 282.0 489 100.0
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 2.3e-61 240.7 489 92.8
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 8.8e-53 212.2 485 87.4
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 3.3e-52 210.3 489 85.3
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 4.1e-50 203.4 489 86.3
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 1.2e-49 201.8 485 87.8
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 2.6e-49 200.7 488 85.0
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 3.4e-49 200.3 491 89.4
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 1.7e-48 198.0 490 89.2
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.4e-47 194.9 488 82.0
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 7.2e-47 192.6 488 81.8
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 9.4e-47 192.2 489 85.9
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 9.4e-47 192.2 489 85.9
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 9.4e-47 192.2 488 82.8
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.6e-46 191.4 478 85.6
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 1.6e-46 191.4 489 89.0
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 4.7e-46 189.9 491 84.9
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 4.7e-46 189.9 489 84.5
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 7.9e-46 189.1 488 83.4
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 1.0e-45 188.7 488 88.7
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 5.2e-45 186.4 484 88.0
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 6.7e-45 186.0 489 83.6
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 6.7e-45 186.0 489 84.3
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 6.7e-45 186.0 489 84.9
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 1.1e-44 185.3 489 84.9
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 1.5e-44 184.9 489 84.7
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.0e-44 184.5 491 84.5
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.0e-44 184.5 489 84.0
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 2.6e-44 184.1 484 87.6
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 3.3e-44 183.7 489 84.7
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 7.4e-44 182.6 484 87.4
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.7e-43 181.4 489 83.0
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 4.8e-43 179.9 482 83.6
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 4.8e-43 179.9 488 87.9
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 8.2e-43 179.1 488 88.3
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 1.4e-42 178.3 488 83.0
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 3.1e-42 177.2 488 83.6
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 3.1e-42 177.2 488 86.5
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 5.3e-42 176.4 488 87.7
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 7.0e-42 176.0 489 85.5
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 2.6e-41 174.1 489 81.8
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 3.5e-41 173.7 488 82.6
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 5.9e-41 172.9 496 59.7
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 1.3e-40 171.8 116 73.3
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.2e-40 171.0 489 83.2
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 6.5e-40 169.5 114 73.7
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 6.5e-40 169.5 486 82.7
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.1e-39 168.7 490 87.3
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 1.5e-39 168.3 116 72.4
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.5e-39 166.4 119 73.1
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 7.2e-39 166.0 484 87.6
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 9.4e-39 165.6 489 87.1
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 9.4e-39 165.6 471 86.8
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 2.7e-38 164.1 484 87.4
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 2.7e-38 164.1 484 87.4
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 3.6e-38 163.7 489 82.0
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 3.6e-38 163.7 115 69.6
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 6.1e-38 162.9 115 71.3
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.0e-37 162.2 114 71.1
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.0e-37 162.2 115 71.3
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.0e-37 162.2 489 81.8
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 1.0e-37 162.2 114 71.1
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 1.4e-37 161.8 110 73.6
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 1.8e-37 161.4 116 69.8
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 2.3e-37 161.0 108 74.1
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 3.0e-37 160.6 484 87.0
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 3.0e-37 160.6 484 87.0
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 3.0e-37 160.6 488 85.7
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 4.0e-37 160.2 114 71.9
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 6.7e-37 159.5 110 71.8
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.7e-37 159.5 127 68.5
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.2e-36 158.7 464 86.4
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 1.5e-36 158.3 114 71.1
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 2.6e-36 157.5 109 72.5
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 7.5e-36 156.0 115 69.6
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 2.2e-35 154.5 114 67.5
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 3.7e-35 153.7 113 67.3
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 1.1e-34 152.1 487 80.9
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 5.3e-34 149.8 116 62.9
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 7.0e-34 149.4 486 78.8
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 9.1e-34 149.1 112 67.9
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.6e-33 148.3 501 80.2
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 3.5e-33 147.1 107 65.4
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 1.0e-32 145.6 493 79.1
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 2.2e-32 144.4 110 63.6
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 2.2e-32 144.4 113 67.3
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 2.2e-32 144.4 114 65.8
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 2.9e-32 144.1 102 69.6
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 2.5e-31 141.0 114 61.4
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 3.2e-31 140.6 107 67.3
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 1.6e-30 138.3 97 72.2
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 6.1e-30 136.3 104 67.3
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 3.0e-29 134.0 108 61.1
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 2.0e-28 131.3 503 76.3
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 4.4e-28 130.2 99 68.7
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 5.7e-28 129.8 111 56.8
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 1.1e-26 125.6 121 57.0
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 1.1e-26 125.6 121 57.0
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 1.1e-26 125.6 102 62.7
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 3.1e-26 124.0 95 66.3
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 7.0e-26 122.9 490 65.9
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 9.1e-26 122.5 100 63.0
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 1.3e-24 118.6 484 75.0
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 9.5e-23 112.5 117 55.6
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 1.2e-22 112.1 92 60.9
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.6e-22 111.7 102 54.9
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 2.1e-22 111.3 92 60.9
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 3.6e-22 110.5 91 62.6
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.0e-21 107.1 92 82.6
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 7.5e-20 102.8 93 78.5
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 8.3e-19 99.4 91 79.1
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.3e-16 92.0 55 83.6
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 5.6e-15 86.7 65 61.5
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 1.2e-14 85.5 64 65.6
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 6.1e-14 83.2 95 69.5
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.0e-13 82.4 62 62.9
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.0e-13 82.4 62 62.9
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.0e-12 78.2 86 72.1
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 4.4e-12 77.0 100 43.0
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 5.4e-10 70.1 62 54.8
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 1.2e-09 68.9 85 45.9
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 7.8e-09 66.2 51 58.8
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 1.0e-08 65.9 61 52.5
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 1.0e-08 65.9 61 52.5
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 2.8e-06 57.8 87 63.2


User provided reference genes

Program Settings