Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1240 Punica granatum HOM05D007578 ORTHO05D009497 9.3e-55 217.2 167 100.0
Sed0003773 Sechium edule HOM05D007578 ORTHO05D009497 7.4e-20 101.3 141 73.0
SGA_v2.0_scaffold15G07205 Striga asiatica HOM05D007578 ORTHO05D009497 8.2e-19 97.8 171 63.7
CANSAT01G2356 Cannabis sativa HOM05D007578 ORTHO05D009497 3.1e-18 95.9 164 60.4
Nitab4.5_0000108g0140 Nicotiana tabacum HOM05D007578 ORTHO05D009497 3.1e-18 95.9 131 67.2
MELO3C020917.2 Cucumis melo HOM05D007578 ORTHO05D009497 4.1e-18 95.5 165 66.7
CsaV3_2G017140 Cucumis sativus L. HOM05D007578 ORTHO05D009497 4.1e-18 95.5 166 66.3
Lj4P136T24 Lonicera japonica HOM05D007578 ORTHO05D009497 5.3e-18 95.1 129 68.2
Nitab4.5_0007463g0020 Nicotiana tabacum HOM05D007578 ORTHO05D009497 9.1e-18 94.4 131 67.2
CiPaw.01G029100 Carya illinoinensis HOM05D007578 ORTHO05D009497 1.6e-17 93.6 143 66.4
COL.COLO4_22180 Corchorus olitorius HOM05D007578 ORTHO05D009497 1.6e-17 93.6 174 63.8
ClCG02G013060 Citrullus lanatus HOM05D007578 ORTHO05D009497 2.0e-17 93.2 166 65.1
Potri.007G034300 Populus trichocarpa HOM05D007578 ORTHO05D009497 2.6e-17 92.8 156 65.4
Cc07_g05400 Coffea canephora HOM05D007578 ORTHO05D009497 1.0e-16 90.9 169 59.2
Sabra07G0029900 Salix brachista HOM05D007578 ORTHO05D009497 1.0e-16 90.9 170 61.2
Actinidia36527 Actinidia chinensis HOM05D007578 ORTHO05D009497 1.3e-16 90.5 167 62.9
Thecc.01G045800 Theobroma cacao HOM05D007578 ORTHO05D009497 1.3e-16 90.5 170 60.0
Duzib147G1180 Durio zibethinus HOM05D007578 ORTHO05D009497 1.7e-16 90.1 170 62.9
MSTRG.23805 Avicennia marina HOM05D007578 ORTHO05D009497 2.9e-16 89.4 169 59.2
CAN.G836.20 Capsicum annuum HOM05D007578 ORTHO05D009497 2.9e-16 89.4 132 66.7
Sopen02g034790 Solanum pennellii HOM05D007578 ORTHO05D009497 3.8e-16 89.0 170 61.2
MD15G1273300 Malus domestica HOM05D007578 ORTHO05D009497 8.5e-16 87.8 161 60.2
Solyc02g090100.1 Solanum lycopersicum HOM05D007578 ORTHO05D009497 1.1e-15 87.4 145 65.5
Haze_15166 Corylus avellana HOM05D007578 ORTHO05D009497 3.2e-15 85.9 171 60.8
Duzib264G1198 Durio zibethinus HOM05D007578 ORTHO05D009497 3.2e-15 85.9 141 60.3
Peaxi162Scf00535g00071 Petunia axillaris HOM05D007578 ORTHO05D009497 4.2e-15 85.5 167 55.1
Prupe.7G145300 Prunus persica HOM05D007578 ORTHO05D009497 4.2e-15 85.5 161 61.5
Gohir.A02G161500 Gossypium hirsutum HOM05D007578 ORTHO05D009497 5.5e-15 85.1 165 49.7
QL06p044247 Quercus lobata HOM05D007578 ORTHO05D009497 5.5e-15 85.1 172 55.8
RcHm_v2.0_Chr2g0103251 Rosa chinensis HOM05D007578 ORTHO05D009497 7.2e-15 84.7 141 64.5
PGSC0003DMG400037576 Solanum tuberosum HOM05D007578 ORTHO05D009497 7.2e-15 84.7 168 60.1
Gohir.A11G045100 Gossypium hirsutum HOM05D007578 ORTHO05D009497 9.4e-15 84.3 141 67.4
Gohir.D11G048600 Gossypium hirsutum HOM05D007578 ORTHO05D009497 9.4e-15 84.3 141 67.4
arahy.Tifrunner.gnm1.ann1.UX6CPD Arachis hypogaea HOM05D007578 ORTHO05D009497 1.6e-14 83.6 157 63.7
Glyma.01G182600 Glycine max HOM05D007578 ORTHO05D009497 2.7e-14 82.8 149 66.4
Psat0s4627g0160 Pisum sativum HOM05D007578 ORTHO05D009497 2.7e-14 82.8 130 64.6
TPR.G29848 Trifolium pratense HOM05D007578 ORTHO05D009497 2.7e-14 82.8 128 64.1
arahy.Tifrunner.gnm1.ann1.25C3YR Arachis hypogaea HOM05D007578 ORTHO05D009497 3.6e-14 82.4 157 63.1
CSS0031523 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 4.7e-14 82.0 173 55.5
CSS0032257 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 4.7e-14 82.0 173 55.5
Ca_24809_v3 Cicer arietinum L. HOM05D007578 ORTHO05D009497 8.0e-14 81.3 128 58.6
Gorai.003G019400 Gossypium raimondii HOM05D007578 ORTHO05D009497 8.0e-14 81.3 165 49.7
Manes.13G132100 Manihot esculenta HOM05D007578 ORTHO05D009497 8.0e-14 81.3 171 59.1
Gorai.007G052200 Gossypium raimondii HOM05D007578 ORTHO05D009497 3.0e-13 79.3 141 66.0
Lalb_Chr16g0378091 Lupinus albus HOM05D007578 ORTHO05D009497 3.0e-13 79.3 160 58.1
Lalb_Chr16g0378311 Lupinus albus HOM05D007578 ORTHO05D009497 3.0e-13 79.3 160 58.1
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 3.0e-13 79.3 171 59.6
FAN19G1163 Fragaria x ananassa HOM05D007578 ORTHO05D009497 4.0e-13 79.0 130 66.2
FAN23G2171 Fragaria x ananassa HOM05D007578 ORTHO05D009497 5.2e-13 78.6 130 62.3
THA.LOC104804219 Tarenaya hassleriana HOM05D007578 ORTHO05D009497 6.7e-13 78.2 140 67.9
FAN26G3047 Fragaria x ananassa HOM05D007578 ORTHO05D009497 1.2e-12 77.4 138 60.9
Oeu032922.1 Olea europaea HOM05D007578 ORTHO05D009497 1.2e-12 77.4 167 56.9
TAR628G0552 Trochodendron aralioides HOM05D007578 ORTHO05D009497 1.2e-12 77.4 157 61.1
FvH4_1g14510 Fragaria vesca HOM05D007578 ORTHO05D009497 1.5e-12 77.0 130 61.5
Hma1.2p1_0261F.1_g104930 Hydrangea macrophylla HOM05D007578 ORTHO05D009497 2.0e-12 76.6 162 52.5
MD02G1158500 Malus domestica HOM05D007578 ORTHO05D009497 2.0e-12 76.6 157 58.0
Carub.0004s0288 Capsella rubella HOM05D007578 ORTHO05D009497 3.3e-12 75.9 160 58.8
Aa31LG7G13200 Aethionema arabicum HOM05D007578 ORTHO05D009497 4.4e-12 75.5 173 55.5
Gohir.D03G019000 Gossypium hirsutum HOM05D007578 ORTHO05D009497 5.7e-12 75.1 156 50.6
Ah.03g142130 Amaranthus hybridus HOM05D007578 ORTHO05D009497 9.7e-12 74.3 130 68.5
DCAR_010946 Daucus carota HOM05D007578 ORTHO05D009497 9.7e-12 74.3 159 58.5
Migut.H00501 Erythranthe guttata HOM05D007578 ORTHO05D009497 9.7e-12 74.3 169 47.9
A04p18050 Brassica napus HOM05D007578 ORTHO05D009497 1.3e-11 73.9 172 55.8
Sc03g0001220 Simmondsia chinensis HOM05D007578 ORTHO05D009497 1.3e-11 73.9 135 51.1
BraA04t17423Z Brassica rapa HOM05D007578 ORTHO05D009497 1.7e-11 73.6 172 55.2
Medtr5g018590 Medicago truncatula HOM05D007578 ORTHO05D009497 1.7e-11 73.6 128 57.8
Sp4g02640 Schrenkiella parvula HOM05D007578 ORTHO05D009497 1.7e-11 73.6 153 58.8
AT2G23670 Arabidopsis thaliana HOM05D007578 ORTHO05D009497 2.2e-11 73.2 155 58.7
CARHR114700 Cardamine hirsuta HOM05D007578 ORTHO05D009497 2.2e-11 73.2 152 59.2
SalBow1G1613 Salvia bowleyana HOM05D007578 ORTHO05D009497 2.8e-11 72.8 131 64.9
TAR376G0355 Trochodendron aralioides HOM05D007578 ORTHO05D009497 2.8e-11 72.8 143 61.5
BcaB06g27923 Brassica carinata HOM05D007578 ORTHO05D009497 3.7e-11 72.4 169 57.4
C04p52990 Brassica napus HOM05D007578 ORTHO05D009497 3.7e-11 72.4 172 55.8
BolC4t26860H Brassica oleracea HOM05D007578 ORTHO05D009497 3.7e-11 72.4 172 55.8
Glyma.11G060900 Glycine max HOM05D007578 ORTHO05D009497 3.7e-11 72.4 149 60.4
MBI07_g23234_MAGBIO Magnolia biondii HOM05D007578 ORTHO05D009497 6.3e-11 71.6 166 58.4
TWI53G0440 Tripterygium wilfordii HOM05D007578 ORTHO05D009497 8.2e-11 71.2 157 61.1
AL4G13660 Arabidopsis lyrata HOM05D007578 ORTHO05D009497 1.4e-10 70.5 151 56.3
Dinv39922 Davidia involucrata HOM05D007578 ORTHO05D009497 1.4e-10 70.5 215 48.4
Lsat_1_v5_gn_3_94000 Lactuca sativa HOM05D007578 ORTHO05D009497 5.3e-10 68.6 125 61.6
FAN28G2485 Fragaria x ananassa HOM05D007578 ORTHO05D009497 9.1e-10 67.8 102 69.6
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.2e-09 67.4 127 62.2
Cpa.g.sc15.63 Carica papaya HOM05D007578 ORTHO05D009497 1.6e-09 67.0 128 58.6
Phvul.002G023600 Phaseolus vulgaris HOM05D007578 ORTHO05D009497 2.0e-09 66.6 156 56.4
Thhalv10000353m.g Eutrema salsugineum HOM05D007578 ORTHO05D009497 2.7e-09 66.2 153 56.2
Ciclev10026636m.g Citrus clementina HOM05D007578 ORTHO05D009497 3.5e-09 65.9 170 43.5
Peaxi162Scf00150g00132 Petunia axillaris HOM05D007578 ORTHO05D009497 2.9e-08 62.8 108 63.0
EL10Ac6g14844 Beta vulgaris HOM05D007578 ORTHO05D009497 5.0e-08 62.0 144 47.9
HPP92_014833 Vanilla planifolia HOM05D007578 ORTHO05D009497 1.5e-07 60.5 132 44.7
HanXRQChr12g0378461 Helianthus annuus HOM05D007578 ORTHO05D009497 3.2e-07 59.3 124 39.5
Dinv26776 Davidia involucrata HOM05D007578 ORTHO05D009497 5.5e-07 58.5 150 51.3
CAN.G1525.2 Capsicum annuum HOM05D007578 ORTHO05D009497 7.2e-07 58.2 90 48.9
CDE11G1131 Ceratophyllum demersum HOM05D007578 ORTHO05D009497 7.2e-07 58.2 128 49.2
Atru.chr3.471 Acer truncatum HOM05D007578 ORTHO05D009497 4.7e-06 55.5 163 49.1
ECA246G0471 Erigeron canadensis HOM05D007578 ORTHO05D009497 8.0e-06 54.7 105 58.1


User provided reference genes

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