Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 2.4e-76 288.9 161 100.0
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 4.2e-20 102.1 115 55.7
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 9.4e-20 100.9 122 49.2
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 9.4e-20 100.9 115 53.9
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 2.1e-19 99.8 101 57.4
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 3.6e-19 99.0 122 52.5
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 1.1e-17 94.0 98 58.2
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.3e-17 92.4 96 57.3
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.3e-17 92.4 96 57.3
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 3.3e-17 92.4 96 57.3
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 4.4e-17 92.0 112 50.9
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 5.7e-17 91.7 92 52.2
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 1.7e-16 90.1 110 53.6
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 3.7e-16 89.0 104 53.8
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 1.4e-15 87.0 110 49.1
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 2.4e-15 86.3 103 52.4
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 4.1e-15 85.5 121 47.1
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.2e-14 84.0 104 48.1
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 2.0e-14 83.2 104 48.1
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 2.0e-14 83.2 94 48.9
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 2.6e-14 82.8 118 44.9
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 2.6e-14 82.8 121 46.3
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 2.6e-14 82.8 130 46.9
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 4.5e-14 82.0 97 52.6
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 5.9e-14 81.6 97 48.5
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 5.9e-14 81.6 110 48.2
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 7.7e-14 81.3 96 50.0
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.0e-13 80.9 95 49.5
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.7e-13 80.1 134 44.0
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 1.7e-13 80.1 84 57.1
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 2.2e-13 79.7 107 43.0
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 2.2e-13 79.7 102 53.9
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 2.9e-13 79.3 84 56.0
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 3.8e-13 79.0 134 44.0
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.8e-13 79.0 134 44.8
DCAR_026537 Daucus carota HOM05D007558 ORTHO05D009245 6.5e-13 78.2 82 52.4
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 1.1e-12 77.4 96 53.1
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.2e-12 75.9 120 44.2
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 3.2e-12 75.9 134 43.3
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 5.5e-12 75.1 87 48.3
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 5.5e-12 75.1 104 45.2
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 5.5e-12 75.1 100 49.0
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 7.2e-12 74.7 85 52.9
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 7.2e-12 74.7 135 44.4
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 7.2e-12 74.7 108 43.5
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 7.2e-12 74.7 109 45.0
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 9.4e-12 74.3 89 48.3
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 1.2e-11 73.9 99 42.4
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 1.2e-11 73.9 92 45.7
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 1.6e-11 73.6 135 41.5
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 1.6e-11 73.6 83 50.6
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 2.1e-11 73.2 97 55.7
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 2.7e-11 72.8 95 52.6
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 2.7e-11 72.8 119 41.2
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 3.6e-11 72.4 87 47.1
Lalb_Chr16g0382221 Lupinus albus HOM05D007558 ORTHO05D009245 4.7e-11 72.0 107 46.7
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 4.7e-11 72.0 120 40.8
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 6.1e-11 71.6 107 42.1
ECA234G1002 Erigeron canadensis HOM05D007558 ORTHO05D009245 8.0e-11 71.2 89 48.3
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 8.0e-11 71.2 126 40.5
Sopen04g014760 Solanum pennellii HOM05D007558 ORTHO05D009245 8.0e-11 71.2 86 47.7
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 1.0e-10 70.9 102 49.0
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.0e-10 70.9 98 43.9
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.0e-10 70.9 101 42.6
Sc11g0001140 Simmondsia chinensis HOM05D007558 ORTHO05D009245 1.4e-10 70.5 121 39.7
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.8e-10 70.1 96 45.8
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 1.8e-10 70.1 108 46.3
Solyc04g026250.1 Solanum lycopersicum HOM05D007558 ORTHO05D009245 2.3e-10 69.7 86 47.7
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 2.3e-10 69.7 76 53.9
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 3.9e-10 68.9 92 47.8
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 5.2e-10 68.6 68 57.4
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 5.2e-10 68.6 94 46.8
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 6.7e-10 68.2 113 46.0
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 8.8e-10 67.8 119 41.2
Manes.13G029400 Manihot esculenta HOM05D007558 ORTHO05D009245 1.5e-09 67.0 83 47.0
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 2.0e-09 66.6 77 53.2
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 2.6e-09 66.2 112 42.0
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 7.4e-09 64.7 109 41.3
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 9.7e-09 64.3 127 39.4
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 1.3e-08 63.9 109 41.3
VMungo0251G2708 Vigna mungo HOM05D007558 ORTHO05D009245 1.3e-08 63.9 95 41.1
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 2.2e-08 63.2 107 43.9
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 2.2e-08 63.2 97 45.4
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 2.8e-08 62.8 89 43.8
Ah.03g132750 Amaranthus hybridus HOM05D023191 ORTHO05D009245 4.8e-08 62.0 94 42.6
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 8.2e-08 61.2 138 36.2
Lsat_1_v5_gn_4_5541 Lactuca sativa HOM05D007558 ORTHO05D009245 8.2e-08 61.2 78 43.6
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 1.1e-07 60.8 110 42.7
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 1.8e-07 60.1 124 37.9
EL10Ac6g13681 Beta vulgaris HOM05D023191 ORTHO05D009245 7.0e-07 58.2 95 41.1
Ah.02g129970 Amaranthus hybridus HOM05D023191 ORTHO05D009245 1.2e-06 57.4 93 43.0
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 1.6e-06 57.0 61 52.5
Sed0023819 Sechium edule HOM05D007558 ORTHO05D009245 1.6e-06 57.0 66 54.5
unitig_22.g6434 Utricularia gibba HOM05D007558 ORTHO05D009245 2.0e-06 56.6 77 44.2
unitig_8.g3942 Utricularia gibba HOM05D007558 ORTHO05D009245 3.5e-06 55.8 62 50.0
Glyma.01G030000 Glycine max HOM05D007558 ORTHO05D009245 4.5e-06 55.5 117 35.9
unitig_8.g3152 Utricularia gibba HOM05D007558 ORTHO05D009245 4.5e-06 55.5 78 43.6


User provided reference genes

Program Settings