Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 4.8e-106 387.9 201 100.0
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 2.7e-77 292.4 198 73.7
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 6.1e-77 291.2 198 73.7
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 8.8e-76 287.3 198 72.7
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.2e-75 287.0 198 73.2
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.2e-75 287.0 198 72.2
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.7e-74 283.1 198 72.7
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.7e-74 283.1 198 68.7
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 2.2e-74 282.7 198 72.2
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 2.2e-74 282.7 199 70.9
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 2.8e-74 282.3 198 68.7
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 2.8e-74 282.3 198 72.7
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 2.8e-74 282.3 198 71.7
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.8e-74 281.6 198 72.7
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.8e-74 281.6 198 69.2
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 6.3e-74 281.2 198 71.2
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 8.2e-74 280.8 198 72.7
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 1.1e-73 280.4 198 69.7
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.8e-73 279.6 198 72.2
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 3.1e-73 278.9 198 69.2
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 5.3e-73 278.1 198 70.7
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.3e-73 278.1 200 69.5
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 7.0e-73 277.7 200 68.5
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.2e-72 276.9 198 70.2
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.0e-72 276.2 198 69.7
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 2.7e-72 275.8 198 71.2
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 5.9e-72 274.6 198 70.2
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 5.9e-72 274.6 198 67.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 7.7e-72 274.2 198 68.2
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.0e-71 273.9 198 69.2
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.0e-71 273.9 198 70.7
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.0e-71 273.9 198 70.7
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 1.3e-71 273.5 198 70.7
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.3e-71 273.5 198 69.7
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.7e-71 273.1 198 70.2
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 2.2e-71 272.7 198 68.7
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 3.8e-71 271.9 198 68.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 3.8e-71 271.9 198 67.7
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 6.5e-71 271.2 198 67.2
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 6.5e-71 271.2 198 70.2
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.1e-70 270.4 200 65.0
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.1e-70 270.4 198 68.7
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.5e-70 270.0 198 70.7
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 69.2
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 2.5e-70 269.2 198 68.7
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.5e-70 269.2 198 68.7
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 5.5e-70 268.1 198 68.7
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 9.4e-70 267.3 198 67.2
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.6e-69 266.5 197 67.5
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 2.1e-69 266.2 197 67.0
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 2.1e-69 266.2 198 67.7
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 2.7e-69 265.8 198 68.7
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 3.6e-69 265.4 198 68.2
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 6.1e-69 264.6 198 67.7
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 6.1e-69 264.6 198 68.7
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 8.0e-69 264.2 198 66.2
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.0e-68 263.8 198 66.7
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 1.0e-68 263.8 198 67.2
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.8e-68 263.1 197 66.5
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.3e-68 262.7 208 64.9
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 2.3e-68 262.7 198 65.7
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 2.3e-68 262.7 198 65.7
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.3e-68 262.7 198 66.7
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-68 262.7 198 66.7
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 3.0e-68 262.3 198 67.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 3.0e-68 262.3 198 66.2
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 4.0e-68 261.9 198 65.7
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 4.0e-68 261.9 197 65.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 4.0e-68 261.9 198 65.7
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 8.8e-68 260.8 198 68.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.2e-67 260.4 204 67.2
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.5e-67 260.0 197 65.5
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.5e-67 260.0 198 65.2
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.5e-67 260.0 198 66.7
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 2.0e-67 259.6 191 69.1
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 2.6e-67 259.2 198 64.6
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 3.4e-67 258.8 198 68.2
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.4e-67 258.5 198 66.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 7.5e-67 257.7 198 65.7
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.7e-66 256.5 198 64.6
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.7e-66 256.5 191 68.6
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.8e-66 255.8 198 65.7
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.7e-66 255.4 191 67.0
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 3.7e-66 255.4 191 68.1
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 6.3e-66 254.6 201 63.7
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 3.1e-65 252.3 198 66.7
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 7.0e-65 251.1 201 64.2
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.2e-64 250.4 194 66.0
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 1.2e-64 250.4 198 62.6
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-64 249.6 198 64.6
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 4.5e-64 248.4 198 62.6
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 4.5e-64 248.4 198 64.1
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 5.9e-64 248.1 198 63.6
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 5.9e-64 248.1 195 64.6
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.0e-63 247.3 198 63.1
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.0e-63 245.0 199 64.3
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 3.3e-62 242.3 179 69.3
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.5e-62 241.5 180 67.2
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 2.1e-61 239.6 199 62.3
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.8e-61 239.2 184 65.8
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.7e-61 238.4 179 66.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 6.1e-61 238.0 194 60.8
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 8.0e-61 237.7 198 60.1
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.8e-60 236.5 173 67.6
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.8e-60 236.5 200 61.5
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.3e-60 236.1 198 62.6
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.2e-59 233.8 200 62.5
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.0e-59 233.0 198 62.1
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 2.0e-59 233.0 198 61.1
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.3e-58 230.3 174 64.9
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 3.7e-58 228.8 198 60.6
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 4.9e-58 228.4 191 57.6
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.1e-57 227.3 181 64.6
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 4.1e-57 225.3 198 58.6
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 5.4e-57 224.9 328 44.2
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.0e-55 220.7 235 53.6
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.7e-55 219.9 165 69.7
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.8e-52 209.9 217 51.6
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 6.8e-52 208.0 248 49.2
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.6e-48 196.8 217 51.6
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.6e-48 195.3 195 51.8
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.6e-47 191.4 233 48.9
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.9e-46 189.9 167 60.5
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.2e-45 187.2 188 50.0
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.8e-44 183.3 198 49.5
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 4.4e-43 178.7 198 50.5
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 6.4e-42 174.9 223 47.5
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 7.8e-40 167.9 128 68.0
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-39 166.8 114 69.3
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.1e-37 159.8 178 48.9
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.1e-36 156.0 116 68.1
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 9.9e-35 151.0 112 68.8
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.3e-31 140.6 105 63.8
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.1e-31 138.7 144 51.4
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 2.8e-29 132.9 112 61.6
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.4e-28 130.6 207 40.1
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 2.6e-27 126.3 85 75.3
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 4.4e-27 125.6 207 41.5
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.9e-25 120.2 79 73.4
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.2e-25 119.4 94 62.8
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 6.0e-24 115.2 114 53.5
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.0e-23 114.4 79 72.2
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-23 114.0 124 51.6
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.7e-23 113.6 127 49.6
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 6.6e-23 111.7 79 69.6
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.6e-22 107.8 79 64.6
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.6e-21 105.9 98 58.2
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.9e-18 96.3 72 66.7
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 4.9e-18 95.5 78 56.4
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 5.4e-17 92.0 72 58.3
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.7e-16 89.7 69 59.4
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 6.0e-16 88.6 74 62.2
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.0e-15 87.8 77 55.8
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-15 87.4 68 66.2
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.9e-14 83.6 109 45.9
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.3e-14 82.8 197 30.5
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 2.1e-13 80.1 103 42.7
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 6.2e-13 78.6 192 29.7
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 5.4e-09 65.5 45 66.7
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 7.1e-09 65.1 43 69.8
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 6.7e-07 58.5 48 58.3
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 4.3e-06 55.8 41 63.4
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 7.4e-06 55.1 72 37.5
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 7.4e-06 55.1 42 54.8


User provided reference genes

Program Settings