Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 3.4e-157 558.5 329 100.0
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.9e-82 308.1 298 65.4
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-80 304.3 317 63.1
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.8e-79 298.9 322 58.4
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.4e-78 296.6 301 67.1
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 6.9e-78 295.0 319 59.2
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.2e-77 294.3 308 64.9
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.2e-77 294.3 303 63.7
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.5e-77 293.9 300 64.3
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.0e-76 291.2 299 63.9
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 1.7e-76 290.4 327 62.7
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.2e-76 290.0 299 63.9
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 6.5e-76 288.5 296 61.8
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 6.5e-76 288.5 297 62.3
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-75 287.7 311 60.8
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 2.5e-75 286.6 305 62.3
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 3.2e-75 286.2 304 60.9
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.5e-75 285.4 284 66.5
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.2e-74 284.3 317 62.8
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.6e-74 283.9 294 65.6
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 6.1e-74 282.0 296 63.2
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.0e-73 281.2 301 64.1
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.4e-73 280.8 298 62.1
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.1e-73 278.9 320 61.2
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 8.8e-73 278.1 301 61.8
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.5e-72 277.3 313 59.1
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.9e-72 276.9 306 65.4
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.9e-72 276.9 309 59.5
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.9e-72 276.9 289 59.5
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.3e-72 276.2 298 63.8
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 3.3e-72 276.2 288 63.2
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 3.3e-72 276.2 288 63.2
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 3.3e-72 276.2 302 63.2
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.3e-72 275.8 313 61.7
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 9.7e-72 274.6 303 61.1
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.3e-71 274.2 304 62.2
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.7e-71 273.9 324 57.7
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.2e-71 273.5 306 62.4
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.8e-71 273.1 313 62.0
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 8.2e-71 271.6 314 61.5
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.8e-70 270.4 303 63.7
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 2.4e-70 270.0 311 61.4
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 2.4e-70 270.0 313 60.4
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 9.1e-70 268.1 304 62.8
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 2.0e-69 266.9 300 63.0
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.6e-69 266.5 312 59.3
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 7.7e-69 265.0 319 57.1
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.3e-68 264.2 311 61.4
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.9e-68 263.1 304 62.5
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.9e-68 263.1 305 61.0
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 8.5e-68 261.5 311 61.1
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 2.5e-67 260.0 299 59.5
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.4e-67 258.1 303 59.1
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 9.4e-67 258.1 297 62.3
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.1e-66 256.9 308 59.7
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 2.1e-66 256.9 343 52.8
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 2.7e-66 256.5 303 57.8
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.6e-66 256.1 316 56.3
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 3.6e-66 256.1 305 60.3
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.0e-65 254.6 299 59.9
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.0e-65 254.6 288 60.1
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.8e-65 253.8 309 61.5
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 3.0e-65 253.1 294 59.2
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.1e-64 251.1 307 59.9
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.1e-64 251.1 327 56.3
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.5e-64 250.8 307 59.6
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 2.0e-64 250.4 310 55.5
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 7.4e-64 248.4 324 53.1
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.3e-63 247.7 311 59.5
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.8e-63 246.5 290 58.3
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.8e-63 246.5 293 55.3
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.8e-63 246.5 293 55.3
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 3.7e-63 246.1 297 58.9
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 6.3e-63 245.4 283 61.1
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 1.1e-62 244.6 322 57.1
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.1e-62 244.6 306 57.5
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.4e-62 244.2 306 53.3
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 1.4e-62 244.2 311 57.6
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.8e-62 243.8 297 59.3
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.4e-62 243.4 313 55.6
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 3.1e-62 243.0 301 59.1
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 5.3e-62 242.3 350 54.6
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 7.0e-62 241.9 300 57.3
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 1.2e-61 241.1 303 57.4
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.2e-61 241.1 282 59.2
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 7.7e-61 238.4 312 57.7
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.0e-60 238.0 303 58.7
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.0e-60 238.0 302 52.6
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.3e-60 237.7 315 55.9
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 2.9e-60 236.5 328 57.3
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.9e-60 236.5 307 59.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 5.0e-60 235.7 327 55.7
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 5.0e-60 235.7 305 58.7
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.1e-59 234.6 306 56.2
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.4e-59 234.2 316 56.0
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.9e-59 233.8 305 60.3
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.5e-59 233.4 307 57.7
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.5e-59 233.4 311 54.7
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.2e-59 233.0 273 61.5
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 5.5e-59 232.3 296 56.8
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 5.5e-59 232.3 316 55.7
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 9.4e-59 231.5 302 62.9
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.6e-58 230.7 307 58.6
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 6.1e-58 228.8 397 47.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.0e-57 228.0 316 54.4
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 3.9e-57 226.1 312 52.6
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 3.9e-57 226.1 310 58.4
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 5.2e-57 225.7 309 57.0
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 6.7e-57 225.3 295 58.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.5e-56 224.2 293 54.3
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 5.7e-56 222.2 292 55.1
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 7.4e-56 221.9 315 54.0
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 7.4e-56 221.9 267 60.3
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 4.8e-55 219.2 286 54.9
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.1e-54 216.5 292 54.5
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-54 216.5 288 58.3
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-54 216.5 288 58.3
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.6e-53 214.2 340 49.1
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.0e-52 211.5 322 49.1
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.5e-52 208.8 319 53.9
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.1e-51 208.0 327 47.7
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.5e-51 207.6 309 51.8
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 5.5e-51 205.7 225 65.3
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 7.2e-51 205.3 316 47.8
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 2.1e-50 203.8 299 50.5
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.1e-50 203.8 293 52.2
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.7e-50 203.4 293 53.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 6.1e-50 202.2 296 55.4
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 8.0e-50 201.8 300 51.7
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.0e-48 197.2 317 51.1
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.6e-48 196.8 290 53.1
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.6e-48 196.8 307 52.1
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 4.4e-48 196.1 316 52.5
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 9.7e-48 194.9 291 56.7
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.2e-47 193.7 298 54.4
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.2e-47 193.7 306 47.1
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.4e-46 191.0 293 50.9
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.4e-43 178.3 321 42.1
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.2e-42 177.9 213 65.7
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.6e-42 177.6 217 56.2
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 6.8e-41 172.2 267 49.1
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 8.8e-41 171.8 321 43.9
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 9.1e-38 161.8 286 48.6
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.0e-37 160.6 216 54.6
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 5.9e-37 159.1 231 58.4
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 1.5e-35 154.5 243 53.9
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.5e-35 154.5 225 58.2
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 9.5e-35 151.8 210 55.7
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.2e-34 151.4 295 45.8
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.5e-32 144.4 148 57.4
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 7.5e-32 142.1 208 54.8
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 6.3e-31 139.0 103 70.9
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 2.9e-28 130.2 304 43.8
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 8.6e-28 128.6 168 61.3
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 7.3e-27 125.6 326 41.7
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 2.0e-24 117.5 106 61.3
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 2.6e-24 117.1 326 37.1
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 6.4e-23 112.5 315 42.5
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 6.4e-23 112.5 339 40.7
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.7e-21 107.1 96 66.7
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.6e-21 106.3 218 48.2
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 4.6e-21 106.3 87 70.1
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.0e-20 103.6 106 60.4
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 3.9e-20 103.2 89 66.3
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 3.3e-19 100.1 78 69.2
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 8.0e-18 95.5 310 31.9
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-16 91.7 114 53.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 3.4e-16 90.1 78 61.5
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 4.4e-16 89.7 203 51.2
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 1.3e-15 88.2 296 43.2
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.4e-14 84.7 64 60.9
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.0e-13 79.3 63 63.5
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.7e-12 77.8 112 42.0
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.9e-12 76.6 80 55.0
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 9.5e-11 72.0 217 36.9
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 2.8e-10 70.5 87 51.7
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.7e-10 69.7 94 51.1
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.2e-08 65.1 93 47.3
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.6e-08 63.9 45 75.6
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.4e-06 57.4 78 47.4


User provided reference genes

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