Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 1.1e-89 333.2 162 100.0
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 7.4e-49 197.6 152 62.5
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 2.8e-48 195.7 162 60.5
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 2.8e-48 195.7 160 59.4
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 8.2e-48 194.1 162 59.3
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 1.3e-45 186.8 157 56.7
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 2.2e-45 186.0 163 57.7
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 2.2e-45 186.0 165 56.4
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 2.9e-45 185.7 161 55.9
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 2.9e-45 185.7 158 58.9
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 6.5e-45 184.5 157 57.3
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 3.2e-44 182.2 158 55.7
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 4.2e-44 181.8 159 57.2
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 4.2e-44 181.8 162 58.0
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 5.5e-44 181.4 156 55.8
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 5.5e-44 181.4 158 57.0
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 5.5e-44 181.4 159 55.3
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 7.2e-44 181.0 169 53.8
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 2.1e-43 179.5 162 54.9
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 2.7e-43 179.1 170 52.9
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 3.6e-43 178.7 162 55.6
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 6.1e-43 177.9 158 55.1
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 1.4e-42 176.8 163 52.8
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 1.8e-42 176.4 168 53.6
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 2.3e-42 176.0 165 54.5
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 2.3e-42 176.0 161 53.4
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 3.0e-42 175.6 163 53.4
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 3.9e-42 175.3 169 51.5
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 5.1e-42 174.9 157 56.7
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 6.7e-42 174.5 163 53.4
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 6.7e-42 174.5 151 56.3
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 8.8e-42 174.1 151 57.0
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 1.1e-41 173.7 147 56.5
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 1.5e-41 173.3 155 55.5
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 2.0e-41 172.9 159 52.2
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 2.0e-41 172.9 159 54.1
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 2.0e-41 172.9 153 53.6
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 3.3e-41 172.2 168 52.4
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 4.3e-41 171.8 160 53.1
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 7.4e-41 171.0 149 55.7
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 9.7e-41 170.6 151 58.3
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 9.7e-41 170.6 147 55.8
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 9.7e-41 170.6 163 53.4
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 1.3e-40 170.2 165 52.7
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 2.2e-40 169.5 151 57.6
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 2.2e-40 169.5 170 51.2
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 3.7e-40 168.7 164 53.7
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 4.8e-40 168.3 148 56.8
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 6.3e-40 167.9 162 51.9
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 1.4e-39 166.8 155 54.2
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 3.1e-39 165.6 148 56.8
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 3.1e-39 165.6 154 53.2
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 3.1e-39 165.6 147 53.7
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 6.9e-39 164.5 151 53.6
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 1.2e-38 163.7 159 50.3
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 2.0e-38 162.9 151 51.0
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 3.8e-37 158.7 146 51.4
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 2.5e-36 156.0 201 43.8
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 2.7e-35 152.5 160 49.4
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 1.8e-34 149.8 170 47.1
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 6.7e-34 147.9 157 47.8
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 2.6e-33 146.0 182 45.6
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 7.4e-33 144.4 150 48.7
Duzib168G1093 Durio zibethinus HOM05D007495 ORTHO05D009552 7.4e-33 144.4 158 50.6
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 1.7e-32 143.3 154 48.7
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 1.7e-32 143.3 154 48.7
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 2.8e-32 142.5 154 48.7
Duzib147G1262 Durio zibethinus HOM05D007495 ORTHO05D009552 2.8e-32 142.5 142 51.4
FvH4_3g30910 Fragaria vesca HOM05D007495 ORTHO05D009552 2.8e-32 142.5 127 56.7
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 4.8e-32 141.7 154 48.1
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 4.8e-32 141.7 154 48.1
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 6.3e-32 141.4 153 47.7
HPP92_026750 Vanilla planifolia HOM05D007495 ORTHO05D009552 1.1e-31 140.6 145 48.3
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 1.4e-31 140.2 149 46.3
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 1.4e-31 140.2 149 46.3
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 1.8e-31 139.8 161 46.6
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 2.4e-31 139.4 156 48.1
Gohir.A11G006200 Gossypium hirsutum HOM05D007495 ORTHO05D009552 9.1e-31 137.5 146 45.9
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 1.2e-30 137.1 150 45.3
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 2.0e-30 136.3 148 47.3
AL4G22050 Arabidopsis lyrata HOM05D007495 ORTHO05D009552 4.5e-30 135.2 147 44.2
Gorai.007G006500 Gossypium raimondii HOM05D007495 ORTHO05D009552 4.5e-30 135.2 146 46.6
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 5.9e-30 134.8 165 43.0
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 8.5e-29 131.0 147 46.3
Gohir.D11G005300 Gossypium hirsutum HOM05D007495 ORTHO05D009552 1.5e-28 130.2 146 45.2
CDE08G1192 Ceratophyllum demersum HOM05D007495 ORTHO05D009552 7.2e-28 127.9 138 46.4
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 7.2e-28 127.9 146 45.2
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 1.4e-26 123.6 103 55.3
unitig_27.g25050 Utricularia gibba HOM05D007495 ORTHO05D009552 1.8e-26 123.2 96 58.3
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 8.8e-26 120.9 132 46.2
Pp3c2_14140 Physcomitrium patens HOM05D007495 ORTHO05D009552 2.6e-25 119.4 154 40.9
CSS0034387 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 2.7e-22 109.4 116 48.3
Thecc.09G349300 Theobroma cacao HOM05D007495 ORTHO05D009552 2.2e-21 106.3 104 51.9
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 6.5e-21 104.8 91 54.9
QL01p015485 Quercus lobata HOM05D007495 ORTHO05D000007 1.2e-19 100.5 112 50.0
Solyc01g034070.2 Solanum lycopersicum HOM05D007495 ORTHO05D009552 1.6e-19 100.1 101 48.5
arahy.Tifrunner.gnm1.ann1.48A6J1 Arachis hypogaea HOM05D007495 ORTHO05D009552 6.1e-19 98.2 84 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3308 Anthoceros agrestis HOM05D007495 ORTHO05D009552 4.0e-18 95.5 131 41.2
TAR636G3027 Trochodendron aralioides HOM05D007495 ORTHO05D009552 2.0e-14 83.2 66 57.6
SEGI_19183 Sequoiadendron giganteum HOM05D007495 ORTHO05D009552 3.8e-13 79.0 95 41.1
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 4.9e-08 62.0 47 53.2
Actinidia07176 Actinidia chinensis HOM05D007495 ORTHO05D009552 6.3e-08 61.6 49 59.2
arahy.Tifrunner.gnm1.ann1.U22N6I Arachis hypogaea HOM05D001167 ORTHO05D014890 2.4e-07 59.7 36 69.4


User provided reference genes

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