Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.1e-263 911.8 452 100.0
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 6.8e-185 651.0 454 72.7
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.3e-183 646.7 455 70.5
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.0e-180 637.1 411 74.7
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 4.3e-179 631.7 444 71.4
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.1e-177 627.1 439 70.2
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 3.1e-177 625.5 450 70.9
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 5.2e-177 624.8 444 70.5
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.5e-176 623.2 415 74.5
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 2.0e-176 622.9 452 70.8
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.6e-176 622.5 447 70.0
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 5.8e-176 621.3 447 69.8
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.3e-175 620.2 453 69.1
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.7e-175 619.8 455 69.9
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.2e-175 619.4 415 74.0
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 4.9e-175 618.2 410 74.4
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.9e-175 618.2 446 70.0
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.4e-174 616.7 458 68.8
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.9e-174 616.3 446 69.3
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.9e-174 616.3 448 69.4
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.1e-174 615.1 450 68.9
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.4e-174 614.8 452 69.0
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 9.2e-174 614.0 458 68.6
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 3.5e-173 612.1 439 68.8
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 6.0e-173 611.3 448 69.0
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 1.7e-172 609.8 452 68.6
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 6.6e-172 607.8 410 71.0
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 8.7e-172 607.4 412 72.1
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.1e-171 607.1 452 67.7
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 4.3e-171 605.1 440 68.9
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 7.3e-171 604.4 449 67.5
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 7.3e-171 604.4 415 72.5
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.6e-170 603.2 441 69.6
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 2.8e-170 602.4 399 73.7
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 6.2e-170 601.3 450 69.1
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.1e-169 600.5 412 71.4
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.4e-169 600.1 453 68.2
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.4e-169 599.4 447 68.0
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.5e-168 596.7 394 73.9
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 5.8e-168 594.7 411 70.1
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.2e-167 592.8 414 70.3
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 3.8e-167 592.0 428 69.9
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 6.4e-167 591.3 425 68.2
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 6.4e-167 591.3 417 68.8
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.4e-166 590.1 409 70.4
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.4e-166 588.2 442 65.4
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 7.1e-166 587.8 430 68.6
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 7.1e-166 587.8 412 69.7
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 9.3e-166 587.4 447 64.4
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 1.2e-165 587.0 448 66.3
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.6e-165 586.6 443 67.3
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.6e-165 586.6 389 71.2
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 2.1e-165 586.3 411 70.3
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 3.5e-165 585.5 416 70.2
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 6.0e-165 584.7 425 67.3
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 6.0e-165 584.7 451 66.3
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 6.0e-165 584.7 450 66.7
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.0e-164 583.9 416 70.2
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.0e-164 583.9 414 70.5
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.3e-164 582.8 450 66.7
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 3.0e-164 582.4 447 65.5
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 5.1e-164 581.6 411 70.8
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 8.7e-164 580.9 433 67.4
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.5e-163 579.3 411 70.3
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 3.3e-163 578.9 430 67.2
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.3e-163 578.9 418 69.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 5.6e-163 578.2 442 66.5
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 5.6e-163 578.2 405 70.4
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.1e-162 576.2 409 68.9
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 2.1e-162 576.2 405 69.4
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.1e-162 576.2 393 72.3
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 4.8e-162 575.1 409 68.7
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 4.8e-162 575.1 409 68.7
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 4.8e-162 575.1 449 67.0
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 5.3e-161 571.6 417 65.7
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 2.0e-160 569.7 409 71.1
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.4e-160 568.9 395 70.4
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 5.8e-160 568.2 397 71.8
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.3e-159 567.0 402 71.4
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 1.7e-159 566.6 426 66.0
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 2.9e-159 565.8 384 70.8
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 8.4e-159 564.3 412 69.9
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.4e-158 563.5 413 65.9
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.4e-158 563.5 413 65.9
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 7.1e-158 561.2 409 67.5
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.1e-157 559.7 418 64.8
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.7e-157 559.3 418 64.8
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 3.0e-156 555.8 415 68.2
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 3.9e-156 555.4 395 68.1
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 3.9e-156 555.4 431 65.4
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 8.7e-156 554.3 434 64.5
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 1.5e-155 553.5 412 67.5
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 3.3e-155 552.4 433 64.0
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 3.3e-155 552.4 433 64.2
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 3.3e-155 552.4 411 66.9
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 2.8e-154 549.3 394 66.8
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 8.1e-154 547.7 409 66.7
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 6.9e-153 544.7 467 63.6
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.5e-152 542.0 405 65.4
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.3e-151 540.4 374 69.5
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 2.2e-151 539.7 394 66.8
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.8e-151 538.9 412 64.8
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 9.3e-150 534.3 407 64.9
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 2.7e-149 532.7 391 65.0
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.8e-145 520.0 444 61.7
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 6.9e-145 518.1 443 58.7
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.5e-144 516.9 392 65.1
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 7.6e-144 514.6 396 64.1
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 1.3e-143 513.8 442 59.7
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.7e-143 513.5 455 57.8
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.9e-142 510.0 392 64.5
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.2e-141 507.3 391 63.7
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.6e-141 506.9 447 60.2
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.7e-141 506.1 307 80.1
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 5.1e-140 501.9 424 59.9
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.1e-139 500.7 391 63.4
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 5.7e-139 498.4 406 63.3
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 1.6e-138 496.9 389 62.5
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.6e-138 496.9 396 61.1
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 6.3e-138 495.0 439 60.6
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 6.3e-138 495.0 397 64.0
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 9.0e-137 491.1 390 62.6
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.6e-136 489.6 341 67.4
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 4.5e-136 488.8 388 62.9
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.9e-134 483.4 405 62.7
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 3.2e-134 482.6 353 68.8
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.1e-129 464.5 390 59.5
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.9e-124 449.1 412 55.6
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.3e-121 438.7 264 79.9
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 7.7e-112 408.3 283 70.0
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.1e-105 386.3 250 72.0
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.1e-105 386.0 246 72.8
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.2e-103 380.2 283 66.1
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.6e-101 374.0 283 64.0
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 1.1e-97 361.3 398 48.2
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.0e-92 344.7 398 48.0
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 9.8e-91 338.2 433 45.5
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.2e-89 331.6 283 56.9
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.3e-86 323.2 256 61.3
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.3e-86 322.8 234 67.5
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.3e-71 274.6 173 76.9
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.1e-70 271.6 197 70.1
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 4.6e-64 249.6 176 68.8
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 5.1e-63 246.1 298 46.0
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 4.4e-59 233.0 203 57.1
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 7.6e-51 205.7 200 54.0
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.1e-49 199.1 207 55.1
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.3e-42 178.3 146 59.6
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 2.4e-41 174.1 119 73.1
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.2e-41 173.3 201 49.3
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 9.3e-41 172.2 228 41.7
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 4.0e-36 156.8 181 49.7
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 9.3e-33 145.6 82 80.5
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 6.0e-32 142.9 237 38.8
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.3e-29 135.2 252 33.3
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.3e-29 135.2 253 37.5
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.2e-29 132.9 319 30.7
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 6.5e-26 122.9 76 75.0
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 7.1e-25 119.4 257 36.6
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 4.6e-24 116.7 396 27.3
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.8e-23 114.8 68 76.5
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.1e-23 113.2 68 75.0
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.7e-23 112.5 68 75.0
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 9.0e-20 102.4 122 45.1
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 5.9e-19 99.8 141 36.9
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 7.9e-16 89.4 73 60.3
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 3.0e-15 87.4 96 50.0
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.9e-15 87.0 224 31.7
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.5e-09 67.8 119 37.0
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.7e-08 64.3 38 76.3
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.7e-08 64.3 57 50.9
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 2.6e-06 57.8 142 32.4
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 4.4e-06 57.0 142 31.7
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 7.4e-06 56.2 95 38.9
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 9.7e-06 55.8 135 29.6


User provided reference genes

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