Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 5.2e-179 630.9 321 100.0
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 1.2e-26 124.8 396 31.6
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 1.6e-26 124.4 367 34.3
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 7.3e-24 115.5 347 32.9
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.6e-23 114.4 347 32.9
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 8.1e-23 112.1 351 32.8
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 5.3e-22 109.4 363 32.5
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 9.0e-22 108.6 386 32.4
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 5.8e-21 105.9 351 31.3
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 1.2e-18 98.2 291 32.6
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 2.1e-18 97.4 358 30.7
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 1.0e-17 95.1 343 31.8
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 1.7e-17 94.4 387 29.5
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 8.7e-17 92.0 351 28.8
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.5e-16 91.3 385 29.1
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 1.5e-16 91.3 325 32.9
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 4.3e-16 89.7 325 30.5
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 7.3e-16 89.0 186 36.6
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 1.3e-15 88.2 307 33.2
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 1.3e-15 88.2 282 33.3
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 1.6e-15 87.8 369 29.5
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 1.6e-15 87.8 353 28.6
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 1.6e-15 87.8 368 28.0
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 6.2e-15 85.9 247 33.6
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 1.1e-14 85.1 369 29.3
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 1.1e-14 85.1 298 31.9
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 1.4e-14 84.7 355 30.1
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 1.4e-14 84.7 377 28.6
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 4.0e-14 83.2 298 29.5
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 5.3e-14 82.8 356 31.5
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 6.9e-14 82.4 353 29.2
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 1.2e-13 81.6 204 32.4
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 1.5e-13 81.3 373 27.9
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 2.0e-13 80.9 311 31.5
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 2.0e-13 80.9 332 29.5
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 2.0e-13 80.9 163 39.3
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 2.0e-13 80.9 298 29.2
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 2.6e-13 80.5 356 29.8
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 3.4e-13 80.1 294 29.9
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 5.8e-13 79.3 317 30.3
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 5.8e-13 79.3 342 30.1
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 5.8e-13 79.3 351 28.2
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 7.6e-13 79.0 175 39.4
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 9.9e-13 78.6 198 34.8
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 9.9e-13 78.6 327 28.7
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.3e-12 78.2 338 27.5
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 1.3e-12 78.2 378 29.1
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 1.7e-12 77.8 325 31.1
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 2.2e-12 77.4 347 28.8
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 2.9e-12 77.0 333 27.3
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 3.8e-12 76.6 218 33.9
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 8.4e-12 75.5 326 29.1
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 1.1e-11 75.1 357 30.0
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 2.4e-11 73.9 214 31.8
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 3.2e-11 73.6 216 32.4
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 4.2e-11 73.2 204 33.3
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 5.4e-11 72.8 320 30.3
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 7.1e-11 72.4 373 29.5
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 7.1e-11 72.4 245 29.8
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 9.3e-11 72.0 218 31.7
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.2e-10 71.6 333 25.5
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 1.2e-10 71.6 354 28.8
Gorai.013G042200 Gossypium raimondii HOM05D001841 ORTHO05D001767 2.1e-10 70.9 177 32.2
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 2.7e-10 70.5 182 35.2
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 3.5e-10 70.1 299 31.4
Gohir.D13G037500 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.0e-10 69.3 177 31.6
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 6.0e-10 69.3 320 31.2
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 7.9e-10 68.9 319 29.8
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 1.3e-09 68.2 333 26.4
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 1.3e-09 68.2 397 25.7
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.8e-09 67.8 334 26.3
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 3.0e-09 67.0 360 25.6
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 3.0e-09 67.0 333 26.7
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 3.9e-09 66.6 200 32.0
Sc08g0000020 Simmondsia chinensis HOM05D001841 ORTHO05D001767 5.1e-09 66.2 242 30.6
THA.LOC104819587 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 6.7e-09 65.9 178 33.1
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 8.7e-09 65.5 284 29.2
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 1.1e-08 65.1 318 27.4
ClCG09G017450 Citrullus lanatus HOM05D001841 ORTHO05D001767 1.9e-08 64.3 191 34.0
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 2.5e-08 63.9 148 36.5
CiPaw.05G053900 Carya illinoinensis HOM05D001841 ORTHO05D001767 5.6e-08 62.8 171 32.7
Ca_18656_v3 Cicer arietinum L. HOM05D001841 ORTHO05D001767 5.6e-08 62.8 168 33.3
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 5.6e-08 62.8 174 33.3
Gohir.A13G039000 Gossypium hirsutum HOM05D001841 ORTHO05D001767 7.4e-08 62.4 177 30.5
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 9.6e-08 62.0 138 38.4
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 9.6e-08 62.0 197 35.0
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 9.6e-08 62.0 333 26.4
Sabra04G0095000 Salix brachista HOM05D001841 ORTHO05D001767 9.6e-08 62.0 182 33.5
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 9.6e-08 62.0 196 30.1
BraA03t11907Z Brassica rapa HOM05D001841 ORTHO05D001767 1.3e-07 61.6 184 34.2
A03p26960 Brassica napus HOM05D001841 ORTHO05D001767 1.6e-07 61.2 184 34.2
Medtr4g086620 Medicago truncatula HOM05D001841 ORTHO05D001767 1.6e-07 61.2 164 33.5
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 1.6e-07 61.2 97 41.2
Eucgr.I01168 Eucalyptus grandis HOM05D001841 ORTHO05D001767 2.1e-07 60.8 162 33.3
HanXRQChr11g0324211 Helianthus annuus HOM05D001841 ORTHO05D001767 4.8e-07 59.7 162 33.3
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 1.1e-06 58.5 328 28.4
Glyma.02G134500 Glycine max HOM05D001841 ORTHO05D001767 1.4e-06 58.2 163 34.4
THA.LOC104807355 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 1.4e-06 58.2 185 31.9
CANSAT25G1334 Cannabis sativa HOM05D001841 ORTHO05D001767 1.8e-06 57.8 141 32.6
Duzib052G0781 Durio zibethinus HOM05D001841 ORTHO05D001767 1.8e-06 57.8 146 34.2
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 2.4e-06 57.4 183 32.8
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 2.4e-06 57.4 197 30.5
Potri.004G143500 Populus trichocarpa HOM05D001841 ORTHO05D001767 2.4e-06 57.4 101 38.6
Duzib132G0939 Durio zibethinus HOM05D001841 ORTHO05D001767 4.0e-06 56.6 145 35.2
Actinidia12979 Actinidia chinensis HOM05D001841 ORTHO05D001767 6.9e-06 55.8 167 32.9
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 6.9e-06 55.8 97 39.2
Dinv41084 Davidia involucrata HOM05D002733 ORTHO05D010023 6.9e-06 55.8 112 37.5
Glyma.07G210700 Glycine max HOM05D001841 ORTHO05D001767 6.9e-06 55.8 176 34.1
Lj4g0016353 Lotus japonicus HOM05D001841 ORTHO05D001767 6.9e-06 55.8 173 29.5
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 6.9e-06 55.8 195 33.8
THA.LOC104803686 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 6.9e-06 55.8 197 29.4
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 6.9e-06 55.8 102 41.2


User provided reference genes

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