Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0682 Punica granatum HOM05D006672 ORTHO05D007769 7.2e-61 237.3 139 100.0
COL.COLO4_30405 Corchorus olitorius HOM05D006672 ORTHO05D007769 6.9e-11 71.2 55 70.9
Gohir.A05G131200 Gossypium hirsutum HOM05D006672 ORTHO05D007769 6.9e-11 71.2 55 69.1
TWI12G1441 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 2.0e-10 69.7 81 51.9
RcHm_v2.0_Chr2g0138661 Rosa chinensis HOM05D006672 ORTHO05D007769 3.4e-10 68.9 129 41.1
Gohir.D05G130600 Gossypium hirsutum HOM05D006672 ORTHO05D007769 4.4e-10 68.6 55 69.1
Gorai.009G134300 Gossypium raimondii HOM05D006672 ORTHO05D007769 4.4e-10 68.6 55 69.1
Haze_12408 Corylus avellana HOM05D006672 ORTHO05D007769 5.8e-10 68.2 100 48.0
Rhsim12G0199700 Rhododendron simsii HOM05D006672 ORTHO05D007769 5.8e-10 68.2 78 56.4
Thecc.06G091100 Theobroma cacao HOM05D006672 ORTHO05D007769 5.8e-10 68.2 55 69.1
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 1.3e-09 67.0 55 70.9
Duzib235G0275 Durio zibethinus HOM05D006672 ORTHO05D007769 1.3e-09 67.0 44 77.3
EL10Ac9g22019 Beta vulgaris HOM05D000202 ORTHO05D000117 2.9e-09 65.9 52 67.3
Actinidia24746 Actinidia chinensis HOM05D006672 ORTHO05D007769 3.8e-09 65.5 116 44.0
MD17G1192500 Malus domestica HOM05D006672 ORTHO05D007769 3.8e-09 65.5 44 77.3
Prupe.3G068600 Prunus persica HOM05D006672 ORTHO05D007769 3.8e-09 65.5 44 77.3
CiPaw.02G149600 Carya illinoinensis HOM05D006672 ORTHO05D007769 4.9e-09 65.1 43 76.7
AUR62011637 Chenopodium quinoa HOM05D006672 ORTHO05D007769 4.9e-09 65.1 45 73.3
ECA234G2073 Erigeron canadensis HOM05D006672 ORTHO05D007769 4.9e-09 65.1 48 72.9
Cfa009362 Carpinus fangiana HOM05D006672 ORTHO05D007769 1.4e-08 63.5 101 43.6
AUR62016468 Chenopodium quinoa HOM05D006672 ORTHO05D007769 1.9e-08 63.2 45 71.1
Hma1.2p1_2022F.1_g311340 Hydrangea macrophylla HOM05D006672 ORTHO05D007769 1.9e-08 63.2 40 80.0
Dinv30493 Davidia involucrata HOM05D006672 ORTHO05D007769 2.4e-08 62.8 105 44.8
FAN05G5736 Fragaria x ananassa HOM05D006672 ORTHO05D007769 2.4e-08 62.8 44 75.0
Glyma.08G205200 Glycine max HOM05D006672 ORTHO05D007769 2.4e-08 62.8 110 45.5
CSS0000508 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 3.2e-08 62.4 125 43.2
ClCG07G013120 Citrullus lanatus HOM05D006672 ORTHO05D007769 3.2e-08 62.4 50 66.0
vmacro16964 Vaccinium macrocarpon HOM05D006672 ORTHO05D007769 3.2e-08 62.4 59 59.3
FAN09G1670 Fragaria x ananassa HOM05D006672 ORTHO05D007769 4.2e-08 62.0 44 75.0
BraA06t24303Z Brassica rapa HOM05D006672 ORTHO05D007769 5.4e-08 61.6 96 44.8
BcaC05g25452 Brassica carinata HOM05D006672 ORTHO05D007769 7.1e-08 61.2 98 43.9
C05p13360 Brassica napus HOM05D006672 ORTHO05D007769 7.1e-08 61.2 98 43.9
BolC5t30073H Brassica oleracea HOM05D006672 ORTHO05D007769 7.1e-08 61.2 98 43.9
Ciclev10026595m.g Citrus clementina HOM05D006672 ORTHO05D007769 7.1e-08 61.2 83 51.8
FAN14G5379 Fragaria x ananassa HOM05D006672 ORTHO05D007769 7.1e-08 61.2 104 44.2
A06p11230 Brassica napus HOM05D006672 ORTHO05D007769 9.3e-08 60.8 96 43.8
DCAR_026329 Daucus carota HOM05D006672 ORTHO05D007769 9.3e-08 60.8 111 41.4
TPR.G17666 Trifolium pratense HOM05D006672 ORTHO05D007769 9.3e-08 60.8 53 62.3
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 1.2e-07 60.5 124 43.5
CsaV3_3G025030 Cucumis sativus L. HOM05D006672 ORTHO05D007769 1.2e-07 60.5 50 66.0
Peaxi162Scf00015g00013 Petunia axillaris HOM05D006672 ORTHO05D007769 1.2e-07 60.5 46 69.6
QL05p022164 Quercus lobata HOM05D006672 ORTHO05D007769 1.2e-07 60.5 106 42.5
Sabra03G0029900 Salix brachista HOM05D006672 ORTHO05D007769 1.2e-07 60.5 39 76.9
arahy.Tifrunner.gnm1.ann1.HQ5KA8 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.1e-07 59.7 38 73.7
arahy.Tifrunner.gnm1.ann1.N61AC9 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.1e-07 59.7 103 40.8
Medtr0206s0010 Medicago truncatula HOM05D006672 ORTHO05D007769 2.1e-07 59.7 47 68.1
TWI75G0771 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 2.1e-07 59.7 116 39.7
MELO3C012968.2 Cucumis melo HOM05D006672 ORTHO05D007769 2.7e-07 59.3 50 66.0
Lalb_Chr25g0279941 Lupinus albus HOM05D006672 ORTHO05D007769 2.7e-07 59.3 129 38.8
arahy.Tifrunner.gnm1.ann1.MVJ1PZ Arachis hypogaea HOM05D006672 ORTHO05D007769 3.5e-07 58.9 118 39.0
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 3.5e-07 58.9 112 40.2
Nitab4.5_0001315g0240 Nicotiana tabacum HOM05D006672 ORTHO05D007769 3.5e-07 58.9 46 69.6
Nitab4.5_0008314g0010 Nicotiana tabacum HOM05D006672 ORTHO05D007769 3.5e-07 58.9 46 69.6
Sed0005168 Sechium edule HOM05D006672 ORTHO05D007769 3.5e-07 58.9 40 75.0
BcaC05g25464 Brassica carinata HOM05D006672 ORTHO05D007769 4.6e-07 58.5 96 42.7
unitig_899.g14774 Utricularia gibba HOM05D006672 ORTHO05D007769 4.6e-07 58.5 37 78.4
Aa31LG7G40 Aethionema arabicum HOM05D006672 ORTHO05D007769 6.0e-07 58.2 44 68.2
Ah.01g021520 Amaranthus hybridus HOM05D006672 ORTHO05D007769 6.0e-07 58.2 107 39.3
arahy.Tifrunner.gnm1.ann1.C7681Z Arachis hypogaea HOM05D006672 ORTHO05D007769 6.0e-07 58.2 118 37.3
Ca_20375_v3 Cicer arietinum L. HOM05D006672 ORTHO05D007769 6.0e-07 58.2 89 42.7
Oeu040367.1 Olea europaea HOM05D006672 ORTHO05D007769 6.0e-07 58.2 35 82.9
arahy.Tifrunner.gnm1.ann1.HW7XL7 Arachis hypogaea HOM05D006672 ORTHO05D007769 7.9e-07 57.8 106 40.6
arahy.Tifrunner.gnm1.ann1.ZTP7X5 Arachis hypogaea HOM05D006672 ORTHO05D007769 7.9e-07 57.8 106 39.6
BcaC05g25462 Brassica carinata HOM05D006672 ORTHO05D007769 7.9e-07 57.8 101 42.6
Migut.D01021 Erythranthe guttata HOM05D006672 ORTHO05D007769 7.9e-07 57.8 59 59.3
FvH4_6g31600 Fragaria vesca HOM05D006672 ORTHO05D007769 7.9e-07 57.8 106 43.4
arahy.Tifrunner.gnm1.ann1.07RGV5 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.0e-06 57.4 106 48.1
CARHR015760 Cardamine hirsuta HOM05D006672 ORTHO05D007769 1.0e-06 57.4 73 49.3
Cc04_g03140 Coffea canephora HOM05D006672 ORTHO05D007769 1.0e-06 57.4 108 40.7
Lj3g0012066 Lotus japonicus HOM05D006672 ORTHO05D007769 1.0e-06 57.4 130 39.2
Potri.003G053500 Populus trichocarpa HOM05D006672 ORTHO05D007769 1.0e-06 57.4 138 39.1
Manes.04G128475 Manihot esculenta HOM05D006672 ORTHO05D007769 1.3e-06 57.0 92 44.6
Atru.chr1.3318 Acer truncatum HOM05D006672 ORTHO05D007769 1.7e-06 56.6 123 37.4
Lsat_1_v5_gn_5_130760 Lactuca sativa HOM05D006672 ORTHO05D007769 2.3e-06 56.2 47 68.1
Phvul.010G149100 Phaseolus vulgaris HOM05D006672 ORTHO05D007769 3.0e-06 55.8 110 40.0
SalBow1G8254 Salvia bowleyana HOM05D000380 ORTHO05D000561 3.0e-06 55.8 157 36.3
Lsat_1_v5_gn_5_130661 Lactuca sativa HOM05D006672 ORTHO05D007769 3.9e-06 55.5 47 68.1
HanXRQChr10g0313401 Helianthus annuus HOM05D006672 ORTHO05D007769 5.1e-06 55.1 99 39.4
Sp1g13550 Schrenkiella parvula HOM05D006672 ORTHO05D007769 5.1e-06 55.1 100 43.0
VMungo0331G0342 Vigna mungo HOM05D006672 ORTHO05D007769 5.1e-06 55.1 116 38.8
Medtr4g012950 Medicago truncatula HOM05D006672 ORTHO05D007769 6.6e-06 54.7 47 61.7
Psat7g250280 Pisum sativum HOM05D006672 ORTHO05D007769 6.6e-06 54.7 97 42.3
Carub.0001s1499 Capsella rubella HOM05D006672 ORTHO05D007769 8.7e-06 54.3 100 42.0


User provided reference genes

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