Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0669 Punica granatum HOM05D007935 ORTHO05D007393 5.6e-92 340.9 167 100.0
Thecc.08G181700 Theobroma cacao HOM05D007935 ORTHO05D007393 1.5e-15 87.0 169 39.1
Sabra19G0095700 Salix brachista HOM05D007935 ORTHO05D007393 2.5e-15 86.3 174 36.8
TAR376G0933 Trochodendron aralioides HOM05D007935 ORTHO05D007393 3.2e-15 85.9 163 35.6
Cfa018195 Carpinus fangiana HOM05D007935 ORTHO05D007393 5.5e-15 85.1 176 38.6
QL02p034017 Quercus lobata HOM05D007935 ORTHO05D007393 2.7e-14 82.8 194 34.5
Dinv08012 Davidia involucrata HOM05D007935 ORTHO05D007393 4.7e-14 82.0 157 36.9
Potri.019G084500 Populus trichocarpa HOM05D007935 ORTHO05D007393 8.0e-14 81.3 185 34.6
Rhsim06G0096700 Rhododendron simsii HOM05D007935 ORTHO05D007393 1.0e-13 80.9 174 36.2
PGSC0003DMG400009223 Solanum tuberosum HOM05D007935 ORTHO05D007393 1.0e-13 80.9 151 38.4
TWI32G0406 Tripterygium wilfordii HOM05D007935 ORTHO05D007393 1.0e-13 80.9 155 38.1
Nitab4.5_0000560g0100 Nicotiana tabacum HOM05D007935 ORTHO05D007393 1.4e-13 80.5 184 33.2
Prupe.8G056300 Prunus persica HOM05D007935 ORTHO05D007393 1.4e-13 80.5 183 35.0
Solyc11g017390.2 Solanum lycopersicum HOM05D007935 ORTHO05D007393 8.8e-13 77.8 153 38.6
COL.COLO4_16292 Corchorus olitorius HOM05D007935 ORTHO05D007393 1.2e-12 77.4 166 35.5
Duzib177G0305 Durio zibethinus HOM05D007935 ORTHO05D007393 1.5e-12 77.0 170 37.6
Manes.02G191100 Manihot esculenta HOM05D007935 ORTHO05D007393 4.4e-12 75.5 185 35.7
Migut.C01245 Erythranthe guttata HOM05D007935 ORTHO05D007393 5.7e-12 75.1 162 35.8
Gohir.A09G117400 Gossypium hirsutum HOM05D007935 ORTHO05D007393 5.7e-12 75.1 166 36.7
Potri.013G114000 Populus trichocarpa HOM05D007935 ORTHO05D007393 7.5e-12 74.7 187 34.2
Sopen11g009330 Solanum pennellii HOM05D007935 ORTHO05D007393 7.5e-12 74.7 155 37.4
Phvul.004G084000 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 9.7e-12 74.3 157 31.8
Sabra13G0096500 Salix brachista HOM05D007935 ORTHO05D007393 9.7e-12 74.3 185 31.4
CiPaw.16G062200 Carya illinoinensis HOM05D007935 ORTHO05D007393 2.2e-11 73.2 173 31.2
FAN12G0476 Fragaria x ananassa HOM05D007935 ORTHO05D007393 2.2e-11 73.2 171 37.4
TAR628G0171 Trochodendron aralioides HOM05D007935 ORTHO05D007393 2.2e-11 73.2 169 33.7
Cpa.g.sc66.51 Carica papaya HOM05D007935 ORTHO05D007393 4.8e-11 72.0 166 34.9
Hma1.2p1_0363F.1_g136610 Hydrangea macrophylla HOM05D007935 ORTHO05D007393 8.2e-11 71.2 157 33.1
Dinv41698 Davidia involucrata HOM05D007935 ORTHO05D007393 1.1e-10 70.9 176 36.4
FvH4_4g19940 Fragaria vesca HOM05D007935 ORTHO05D007393 1.1e-10 70.9 168 36.3
FAN07G1822 Fragaria x ananassa HOM05D007935 ORTHO05D007393 1.4e-10 70.5 170 36.5
Gohir.D09G114200 Gossypium hirsutum HOM05D007935 ORTHO05D007393 1.8e-10 70.1 167 36.5
Glyma.02G074300 Glycine max HOM05D007935 ORTHO05D007393 2.4e-10 69.7 156 33.3
Eucgr.F04128 Eucalyptus grandis HOM05D007935 ORTHO05D007393 3.1e-10 69.3 160 35.0
Gorai.006G131900 Gossypium raimondii HOM05D007935 ORTHO05D007393 4.1e-10 68.9 167 36.5
RcHm_v2.0_Chr6g0272051 Rosa chinensis HOM05D007935 ORTHO05D007393 5.3e-10 68.6 164 34.8
Nn5g27748 Nelumbo nucifera HOM05D007935 ORTHO05D007393 7.0e-10 68.2 181 31.5
Glyma.16G156000 Glycine max HOM05D007935 ORTHO05D007393 1.2e-09 67.4 155 32.3
Nitab4.5_0000422g0110 Nicotiana tabacum HOM05D007935 ORTHO05D007393 1.6e-09 67.0 195 31.3
Peaxi162Scf00310g00073 Petunia axillaris HOM05D007935 ORTHO05D007393 1.6e-09 67.0 190 32.1
CSS0018652 Camellia sinensis var. sinensis HOM05D007935 ORTHO05D007393 4.5e-09 65.5 151 33.8
Manes.12G081400 Manihot esculenta HOM05D009958 ORTHO05D007393 4.5e-09 65.5 155 32.9
Lalb_Chr01g0010021 Lupinus albus HOM05D007935 ORTHO05D007393 7.7e-09 64.7 158 33.5
Oeu039600.1 Olea europaea HOM05D007935 ORTHO05D007393 7.7e-09 64.7 160 35.0
Psat6g186560 Pisum sativum HOM05D007935 ORTHO05D007393 1.0e-08 64.3 149 31.5
Haze_17920 Corylus avellana HOM05D007935 ORTHO05D007393 1.3e-08 63.9 160 33.1
arahy.Tifrunner.gnm1.ann1.B1B3Q7 Arachis hypogaea HOM05D007935 ORTHO05D007393 1.7e-08 63.5 159 32.1
Manes.18G100400 Manihot esculenta HOM05D007935 ORTHO05D007393 1.7e-08 63.5 200 31.0
arahy.Tifrunner.gnm1.ann1.QZIQ5C Arachis hypogaea HOM05D007935 ORTHO05D007393 2.2e-08 63.2 157 33.1
SalBow7G1894 Salvia bowleyana HOM05D007935 ORTHO05D007393 2.2e-08 63.2 149 33.6
Atru.chr13.1798 Acer truncatum HOM05D007935 ORTHO05D007393 2.9e-08 62.8 179 29.1
Lj2g0007380 Lotus japonicus HOM05D007935 ORTHO05D007393 3.8e-08 62.4 159 31.4
THA.LOC104810516 Tarenaya hassleriana HOM05D010479 ORTHO05D007393 3.8e-08 62.4 151 33.8
Cpa.g.sc138.32 Carica papaya HOM05D009958 ORTHO05D007393 5.0e-08 62.0 153 33.3
QL10p037244 Quercus lobata HOM05D009958 ORTHO05D007393 6.5e-08 61.6 171 32.7
QL10p038114 Quercus lobata HOM05D009958 ORTHO05D007393 6.5e-08 61.6 171 32.7
Medtr1g096290 Medicago truncatula HOM05D007935 ORTHO05D007393 8.5e-08 61.2 155 30.3
CARHR064730 Cardamine hirsuta HOM05D010479 ORTHO05D007393 1.5e-07 60.5 170 30.6
Manes.13G153300 Manihot esculenta HOM05D009958 ORTHO05D007393 1.5e-07 60.5 149 32.2
AUR62004654 Chenopodium quinoa HOM05D007935 ORTHO05D007393 1.9e-07 60.1 174 32.8
Lj4P515T30 Lonicera japonica HOM05D007935 ORTHO05D007393 2.5e-07 59.7 84 44.0
Nn1g08393 Nelumbo nucifera HOM05D007935 ORTHO05D007393 2.5e-07 59.7 167 31.7
Glyma.10G215500 Glycine max HOM05D007935 ORTHO05D007393 3.2e-07 59.3 157 31.8
Lj4P507T35 Lonicera japonica HOM05D007935 ORTHO05D007393 4.2e-07 58.9 84 44.0
Lalb_Chr19g0129781 Lupinus albus HOM05D007935 ORTHO05D007393 4.2e-07 58.9 169 31.4
TPR.G39557 Trifolium pratense HOM05D007935 ORTHO05D007393 4.2e-07 58.9 148 31.1
Cfa020918 Carpinus fangiana HOM05D009958 ORTHO05D007393 5.5e-07 58.5 85 40.0
CiPaw.15G082200 Carya illinoinensis HOM05D007935 ORTHO05D007393 5.5e-07 58.5 168 32.7
Oeu017878.1 Olea europaea HOM05D007935 ORTHO05D007393 7.2e-07 58.2 155 32.9
AL2G31520 Arabidopsis lyrata HOM05D010479 ORTHO05D007393 9.4e-07 57.8 171 31.0
Ciclev10026723m.g Citrus clementina HOM05D009958 ORTHO05D007393 9.4e-07 57.8 160 31.2
ClCG09G010460 Citrullus lanatus HOM05D029613 ORTHO05D007393 1.2e-06 57.4 184 32.6
Ciclev10003091m.g Citrus clementina HOM05D007935 ORTHO05D007393 1.2e-06 57.4 141 34.8
Gohir.A11G058500 Gossypium hirsutum HOM05D009958 ORTHO05D007393 1.2e-06 57.4 143 31.5
Zm00001eb138480 Zea mays HOM05D059869 ORTHO05D049479 1.2e-06 57.4 151 33.1
Glyma.20G176200 Glycine max HOM05D007935 ORTHO05D007393 2.1e-06 56.6 158 32.3
Thecc.01G147200 Theobroma cacao HOM05D009958 ORTHO05D007393 2.1e-06 56.6 100 39.0
MELO3C008117.2 Cucumis melo HOM05D030816 ORTHO05D028878 3.6e-06 55.8 152 30.9
BcaB05g24691 Brassica carinata HOM05D010479 ORTHO05D007393 4.7e-06 55.5 155 32.3
AT1G71910 Arabidopsis thaliana HOM05D010479 ORTHO05D007393 6.1e-06 55.1 171 30.4
Migut.N03344 Erythranthe guttata HOM05D007935 ORTHO05D007393 6.1e-06 55.1 153 28.8
BcaC03g15309 Brassica carinata HOM05D010479 ORTHO05D007393 8.0e-06 54.7 170 28.8
BolC2t08970H Brassica oleracea HOM05D010479 ORTHO05D007393 8.0e-06 54.7 170 28.8
COL.COLO4_33532 Corchorus olitorius HOM05D009958 ORTHO05D007393 8.0e-06 54.7 114 38.6


User provided reference genes

Program Settings