Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 2.9e-191 671.8 353 100.0
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 3.7e-146 521.9 357 78.2
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 3.9e-143 511.9 370 79.2
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.2e-141 506.9 361 77.6
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 4.7e-141 505.0 361 77.3
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 6.2e-141 504.6 357 77.0
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 8.1e-141 504.2 371 75.5
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.1e-140 503.8 362 76.2
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 1.1e-140 503.8 357 75.9
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.4e-140 503.4 357 76.8
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 6.8e-140 501.1 362 76.0
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 6.8e-140 501.1 343 77.6
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 9.8e-139 497.3 357 75.9
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.7e-138 496.5 357 77.0
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 2.2e-138 496.1 362 76.0
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 4.9e-138 495.0 359 74.9
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.9e-137 493.0 310 83.5
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 4.1e-137 491.9 366 71.9
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 4.1e-137 491.9 357 77.3
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 7.1e-137 491.1 364 76.1
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 9.2e-137 490.7 357 75.4
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.2e-136 490.3 360 74.7
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.2e-136 490.3 364 74.7
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 3.5e-136 488.8 357 75.9
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.0e-135 487.3 309 82.2
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 1.3e-135 486.9 354 75.7
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.3e-135 486.1 357 75.1
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 3.0e-135 485.7 362 75.4
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 5.1e-135 485.0 359 75.5
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 5.1e-135 485.0 310 83.2
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 5.1e-135 485.0 358 74.6
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 6.6e-135 484.6 359 75.2
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 1.9e-134 483.0 362 74.0
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 4.3e-134 481.9 359 74.7
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.6e-134 481.5 358 74.9
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 9.5e-134 480.7 362 72.4
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 9.5e-134 480.7 356 74.4
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.8e-133 479.2 301 82.7
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 4.7e-133 478.4 358 74.3
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.7e-133 478.4 358 74.3
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.7e-133 478.4 358 74.3
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 4.7e-133 478.4 357 74.5
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 8.1e-133 477.6 364 72.3
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.4e-132 476.9 361 74.0
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.4e-132 476.9 362 72.4
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 3.1e-132 475.7 310 81.6
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 4.0e-132 475.3 337 75.4
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 4.0e-132 475.3 359 73.5
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 6.8e-132 474.6 365 71.5
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 6.8e-132 474.6 355 73.8
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 6.8e-132 474.6 359 73.3
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.2e-131 473.8 332 74.1
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 5.8e-131 471.5 335 76.4
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.8e-131 471.5 360 73.9
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.3e-130 470.3 370 70.5
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.7e-130 469.9 319 80.3
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.7e-130 469.9 370 70.3
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 2.2e-130 469.5 357 73.7
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.9e-130 468.4 319 79.9
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 6.4e-130 468.0 363 72.5
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 8.4e-130 467.6 360 74.7
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.1e-129 467.2 357 72.8
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.4e-129 466.8 349 74.2
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.9e-129 466.5 353 72.8
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 2.4e-129 466.1 360 73.3
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 4.1e-129 465.3 358 73.2
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 4.1e-129 465.3 318 79.2
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 7.1e-129 464.5 332 72.6
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 9.2e-129 464.2 297 81.8
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 9.2e-129 464.2 357 70.6
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 9.2e-129 464.2 357 70.6
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 9.2e-129 464.2 408 64.2
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 9.2e-129 464.2 408 64.2
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 2.7e-128 462.6 311 79.7
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 6.0e-128 461.5 291 82.5
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 7.8e-128 461.1 354 70.3
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.7e-127 459.9 311 79.1
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.7e-127 459.9 358 69.6
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.1e-126 457.2 361 70.1
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.5e-126 456.8 356 69.4
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 3.3e-126 455.7 357 73.4
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 4.3e-126 455.3 367 69.8
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.3e-126 455.3 356 69.4
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 5.6e-126 454.9 354 69.2
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 7.3e-126 454.5 348 72.7
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 2.8e-125 452.6 297 80.5
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.8e-125 452.6 363 70.2
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 1.4e-124 450.3 374 67.4
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 2.4e-124 449.5 362 69.3
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.4e-124 449.5 295 78.3
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 2.4e-124 449.5 368 69.6
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 4.0e-124 448.7 361 69.5
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 6.9e-124 448.0 357 71.4
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 8.9e-124 447.6 353 70.8
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 8.9e-124 447.6 354 71.2
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-123 447.2 359 69.4
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.0e-123 446.4 363 68.6
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 2.0e-123 446.4 354 71.2
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 2.6e-123 446.0 351 70.9
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 4.4e-123 445.3 359 68.8
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 4.4e-123 445.3 296 78.4
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 4.4e-123 445.3 255 90.2
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 7.6e-123 444.5 297 80.5
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 9.9e-123 444.1 377 66.3
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.7e-122 443.4 315 73.7
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 2.2e-122 443.0 360 69.4
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.2e-122 443.0 315 73.3
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.9e-122 442.6 360 69.4
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 4.9e-122 441.8 288 80.6
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 6.4e-122 441.4 364 68.4
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 6.4e-122 441.4 360 69.4
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 8.4e-122 441.0 364 68.4
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 1.9e-121 439.9 361 69.5
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.9e-121 439.9 359 68.8
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 3.2e-121 439.1 277 81.6
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 4.6e-120 435.3 313 74.8
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 8.7e-119 431.0 246 91.5
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 7.3e-118 427.9 357 68.1
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.2e-115 420.6 357 66.9
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.7e-114 416.8 315 72.1
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.9e-114 416.0 386 62.4
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.4e-113 413.7 305 74.1
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.2e-112 410.6 345 68.4
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 7.9e-112 407.9 387 61.5
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 9.6e-110 401.0 364 65.9
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 3.6e-109 399.1 225 90.2
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 9.0e-108 394.4 292 70.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.2e-107 394.0 304 69.7
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.8e-107 391.7 248 79.8
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 7.6e-107 391.3 321 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.3e-106 390.6 286 74.5
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.3e-106 390.6 249 79.5
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.4e-105 387.1 287 70.0
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.4e-105 386.3 247 79.8
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 3.5e-104 382.5 246 78.5
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 4.2e-97 359.0 261 69.0
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 2.7e-96 356.3 291 68.7
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 6.3e-93 345.1 365 56.7
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.3e-90 337.4 313 63.3
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 9.3e-89 331.3 239 72.0
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 2.7e-88 329.7 274 65.0
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 1.5e-70 270.8 249 61.4
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 4.1e-60 236.1 156 77.6
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.0e-59 233.8 156 76.9
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 3.6e-56 223.0 168 68.5
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.0e-55 221.5 167 68.3
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 3.2e-49 199.9 108 97.2
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.9e-37 160.2 102 82.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.9e-37 159.5 99 83.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.6e-32 144.4 121 62.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.4e-31 141.4 153 54.2
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 7.3e-25 119.0 102 66.7
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.1e-20 105.1 64 87.5
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 1.4e-20 104.8 61 86.9


User provided reference genes

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