Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 3.9e-48 194.5 101 100.0
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 2.0e-12 75.9 101 48.5
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.0e-12 75.9 97 45.4
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.6e-12 75.5 102 48.0
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 2.2e-11 72.4 101 47.5
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.9e-11 72.0 97 54.6
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.8e-11 71.6 101 48.5
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-10 68.9 101 48.5
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 3.2e-10 68.6 102 46.1
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 4.2e-10 68.2 97 52.6
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.2e-10 68.2 101 47.5
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.5e-10 67.8 103 47.6
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.5e-10 67.8 97 50.5
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.4e-10 67.0 103 44.7
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 9.4e-10 67.0 104 50.0
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 9.4e-10 67.0 99 47.5
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.6e-09 66.2 98 44.9
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.1e-09 65.9 98 42.9
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.7e-09 65.5 102 42.2
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.6e-09 65.1 102 41.2
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 3.6e-09 65.1 97 44.3
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 3.6e-09 65.1 97 51.5
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 4.7e-09 64.7 105 39.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 8.0e-09 63.9 102 41.2
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.0e-08 63.5 102 44.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.0e-08 63.5 102 41.2
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.4e-08 63.2 95 45.3
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.4e-08 63.2 98 44.9
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.8e-08 62.8 101 47.5
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.8e-08 62.8 102 36.3
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.8e-08 62.8 97 48.5
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.8e-08 62.8 102 45.1
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 2.3e-08 62.4 101 40.6
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 3.0e-08 62.0 101 49.5
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 3.0e-08 62.0 94 43.6
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 3.0e-08 62.0 94 43.6
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 4.0e-08 61.6 107 40.2
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.0e-08 61.6 101 45.5
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.0e-08 61.6 101 45.5
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 5.2e-08 61.2 103 40.8
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 5.2e-08 61.2 97 43.3
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 5.2e-08 61.2 103 40.8
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.7e-08 60.8 91 39.6
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 6.7e-08 60.8 102 47.1
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 8.8e-08 60.5 102 45.1
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.1e-07 60.1 97 43.3
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.1e-07 60.1 89 44.9
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.5e-07 59.7 102 40.2
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.5e-07 59.7 96 39.6
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.5e-07 59.7 92 44.6
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.5e-07 59.7 98 41.8
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.3e-07 58.5 92 44.6
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.3e-07 58.5 96 43.8
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 3.3e-07 58.5 98 43.9
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 3.3e-07 58.5 100 47.0
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 3.3e-07 58.5 85 44.7
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 3.3e-07 58.5 96 36.5
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 4.4e-07 58.2 102 38.2
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 5.7e-07 57.8 49 55.1
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.7e-07 57.8 99 40.4
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.7e-07 57.8 99 45.5
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 5.7e-07 57.8 90 45.6
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.5e-07 57.4 102 40.2
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.7e-07 57.0 98 36.7
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 9.7e-07 57.0 109 36.7
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.3e-06 56.6 96 37.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.3e-06 56.6 99 37.4
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.7e-06 56.2 86 44.2
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.7e-06 56.2 110 39.1
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.7e-06 56.2 97 42.3
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.7e-06 56.2 92 42.4
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.7e-06 56.2 97 43.3
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.2e-06 55.8 103 39.8
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-06 55.8 99 45.5
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 2.2e-06 55.8 95 38.9
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.8e-06 55.5 85 41.2
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 2.8e-06 55.5 103 42.7
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 2.8e-06 55.5 86 44.2
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 2.8e-06 55.5 86 44.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.8e-06 55.5 93 39.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 2.8e-06 55.5 84 42.9
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.8e-06 55.5 101 37.6
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.7e-06 55.1 101 43.6
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.7e-06 55.1 98 36.7
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.7e-06 55.1 99 46.5
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 3.7e-06 55.1 92 37.0
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 3.7e-06 55.1 87 43.7
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.7e-06 55.1 66 47.0
Manes.12G117100 Manihot esculenta HOM05D001756 ORTHO05D001581 4.8e-06 54.7 90 42.2
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 4.8e-06 54.7 64 43.8
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.8e-06 54.7 53 54.7
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 8.2e-06 53.9 92 41.3
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 8.2e-06 53.9 97 41.2
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 8.2e-06 53.9 97 41.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 8.2e-06 53.9 104 41.3
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.2e-06 53.9 101 36.6


User provided reference genes

Program Settings