Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1925.6 990 100.0
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1474.5 1000 76.3
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 999 75.5
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 997 75.7
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1457.6 996 75.7
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1456.0 997 75.2
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1451.0 997 75.7
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1450.3 974 76.5
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1437.6 996 75.1
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1437.2 997 73.6
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1436.0 999 74.2
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1434.5 997 74.2
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1432.5 997 74.6
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1429.1 994 73.5
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1427.5 997 73.0
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1424.1 997 72.6
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1423.3 1002 73.0
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1422.1 997 72.7
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1417.5 997 73.3
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1417.1 997 72.6
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1416.7 996 73.5
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1416.0 999 73.2
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1416.0 1000 73.0
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1415.6 986 73.2
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1415.2 986 73.4
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1414.1 1000 72.8
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1410.2 996 73.0
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1408.7 994 72.2
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1408.3 997 73.5
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1407.9 996 72.8
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1405.6 997 72.6
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1404.4 997 73.3
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1403.3 997 72.8
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1402.5 1000 72.5
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 997 72.1
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1401.3 996 72.7
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1399.8 993 71.6
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 1020 71.6
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1398.3 997 72.7
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1398.3 994 72.1
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1397.5 998 71.2
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1397.5 993 72.6
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1397.1 999 71.9
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1391.3 967 73.6
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1386.7 976 73.9
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1385.9 999 71.8
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1385.2 993 70.9
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1382.5 1000 71.4
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1382.5 998 71.6
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1382.1 1081 67.5
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1380.5 998 71.5
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1379.8 998 71.5
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1377.1 993 70.8
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1376.3 993 70.5
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1371.7 997 71.6
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1370.1 1011 70.4
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1367.1 993 69.7
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1366.3 997 71.5
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1365.9 997 70.7
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1364.0 998 70.4
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1363.6 998 70.3
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1363.6 964 72.6
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1362.8 997 70.4
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1362.4 999 71.0
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1362.1 992 70.5
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1359.7 1001 70.5
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1356.7 997 70.0
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1354.3 997 71.5
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1352.0 997 69.6
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1349.0 1000 70.7
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1348.2 999 70.0
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1343.9 964 70.5
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1336.6 997 69.1
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1335.9 999 70.3
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1330.9 1000 69.2
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1328.9 999 69.9
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1327.0 1011 67.9
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1322.8 994 69.9
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1321.6 994 68.9
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1316.2 1001 67.5
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1310.4 987 68.7
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1310.4 987 68.7
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1309.7 997 68.5
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1307.0 966 70.5
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1295.8 900 73.6
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1294.3 1000 67.2
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1293.1 999 67.6
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1291.2 1000 67.4
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1290.4 1004 66.9
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1289.2 1000 67.3
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1286.6 997 68.3
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1285.4 1000 67.4
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1277.3 1030 65.2
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1276.9 999 67.2
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1274.2 922 71.6
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1235.7 993 65.6
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1231.9 917 69.4
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1231.1 979 64.0
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1229.2 967 66.3
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1181.8 997 60.8
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1137.1 866 69.2
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1135.2 916 66.5
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1116.7 1000 60.7
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.3e-300 1036.6 912 61.7
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.7e-300 1036.2 998 55.8
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 2.4e-291 1005.7 730 72.3
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 7.7e-282 974.2 1005 50.7
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 2.1e-279 966.1 1002 51.8
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 1.8e-278 963.0 1002 51.5
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 9.7e-277 957.2 1003 51.8
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 9.1e-275 950.7 1003 49.0
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.3e-257 892.9 618 74.8
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 6.8e-254 881.3 600 75.3
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 4.6e-250 868.6 987 46.4
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 3.9e-249 865.5 849 56.7
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 3.9e-241 839.0 611 71.5
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.1e-241 838.6 749 59.0
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 6.8e-238 828.2 806 53.5
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 6.7e-209 731.9 1084 37.8
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 4.9e-204 715.7 918 42.3
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 2.7e-170 603.6 427 72.4
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 5.4e-142 509.6 325 77.2
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 6.2e-138 496.1 307 80.1
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 4.9e-135 486.5 358 69.6
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.6e-130 471.5 1192 29.6
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.0e-88 331.6 266 62.8
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.0e-88 331.6 266 62.8
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 1.0e-79 302.8 1070 26.9
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 4.1e-57 227.6 236 51.3
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 1.1e-46 193.0 922 24.5
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 4.0e-28 131.3 109 60.6
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 4.4e-27 127.9 144 47.9
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.9e-26 125.2 122 59.8
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 5.0e-23 114.4 143 45.5
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 6.8e-20 104.0 85 61.2
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.6e-15 87.4 53 79.2
Pp3c1_21110 Physcomitrium patens HOM05D002636 ORTHO05D003490 7.8e-08 63.9 271 21.8
Pp3c1_21114 Physcomitrium patens HOM05D002636 ORTHO05D003490 7.8e-08 63.9 271 21.8
Pp3c10_5440 Physcomitrium patens HOM05D002636 ORTHO05D003490 3.0e-07 62.0 262 21.8
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 4.3e-06 58.2 49 55.1


User provided reference genes

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