Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 2.4e-37 158.3 79 100.0
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.0e-27 126.3 77 76.6
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 5.1e-27 124.0 79 81.0
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 5.6e-26 120.6 77 74.0
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 5.6e-26 120.6 77 74.0
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 9.6e-26 119.8 77 72.7
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 4.7e-25 117.5 74 75.7
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 8.1e-25 116.7 73 79.5
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 8.1e-25 116.7 75 73.3
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.1e-24 116.3 77 68.8
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.1e-24 116.3 79 73.4
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 2.4e-24 115.2 75 69.3
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 3.1e-24 114.8 79 75.9
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.1e-24 114.8 66 80.3
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 4.0e-24 114.4 73 74.0
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 6.9e-24 113.6 79 70.9
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.5e-23 112.5 78 69.2
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 2.6e-23 111.7 71 80.3
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 2.6e-23 111.7 77 72.7
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 3.4e-23 111.3 77 66.2
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 3.4e-23 111.3 77 71.4
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 4.4e-23 110.9 65 80.0
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 5.8e-23 110.5 73 71.2
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 7.6e-23 110.2 78 67.9
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 7.6e-23 110.2 80 67.5
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 9.9e-23 109.8 67 76.1
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 1.3e-22 109.4 82 69.5
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 2.2e-22 108.6 70 72.9
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.8e-22 107.8 67 74.6
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 3.8e-22 107.8 77 68.8
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 4.9e-22 107.5 69 72.5
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 4.9e-22 107.5 70 70.0
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 6.4e-22 107.1 78 65.4
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 6.4e-22 107.1 67 74.6
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 1.1e-21 106.3 59 84.7
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 1.4e-21 105.9 71 70.4
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 1.9e-21 105.5 69 71.0
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.9e-21 105.5 70 71.4
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 3.2e-21 104.8 74 66.2
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 3.2e-21 104.8 72 68.1
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 9.3e-21 103.2 74 64.9
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 9.3e-21 103.2 78 62.8
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 9.3e-21 103.2 74 64.9
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.2e-20 102.8 64 73.4
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 2.7e-20 101.7 74 63.5
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 2.7e-20 101.7 77 66.2
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 2.7e-20 101.7 74 63.5
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 2.7e-20 101.7 72 76.4
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 3.5e-20 101.3 74 63.5
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 3.5e-20 101.3 74 66.2
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 4.6e-20 100.9 80 65.0
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 6.0e-20 100.5 65 70.8
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 7.8e-20 100.1 72 65.3
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.0e-19 99.8 74 63.5
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 1.0e-19 99.8 81 66.7
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.7e-19 99.0 67 67.2
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.7e-19 99.0 71 63.4
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 1.7e-19 99.0 79 63.3
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 3.0e-19 98.2 67 68.7
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 3.9e-19 97.8 67 68.7
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 5.1e-19 97.4 71 69.0
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 8.7e-19 96.7 71 69.0
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.1e-18 96.3 61 73.8
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 1.9e-18 95.5 68 69.1
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 2.5e-18 95.1 71 67.6
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 4.3e-18 94.4 72 65.3
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 2.1e-17 92.0 77 59.7
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 2.8e-17 91.7 74 66.2
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 3.6e-17 91.3 63 69.8
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 6.2e-17 90.5 64 62.5
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 8.1e-17 90.1 66 65.2
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 8.1e-17 90.1 54 77.8
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.4e-16 89.4 67 64.2
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.4e-16 89.4 56 73.2
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.4e-16 89.4 68 67.6
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 1.8e-16 89.0 62 69.4
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 4.0e-16 87.8 82 53.7
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 9.0e-16 86.7 74 55.4
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 1.2e-15 86.3 69 66.7
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 1.2e-15 86.3 64 67.2
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 3.4e-15 84.7 67 58.2
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.5e-15 84.3 80 52.5
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.5e-15 84.3 80 52.5
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.5e-15 84.3 80 52.5
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 4.5e-15 84.3 67 64.2
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 4.5e-15 84.3 67 64.2
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 5.8e-15 84.0 80 52.5
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 7.6e-15 83.6 65 60.0
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 7.6e-15 83.6 65 60.0
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 7.6e-15 83.6 65 58.5
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 7.6e-15 83.6 77 55.8
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 9.9e-15 83.2 65 63.1
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 9.9e-15 83.2 68 57.4
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.3e-14 82.8 63 60.3
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 1.7e-14 82.4 69 60.9
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 6.4e-14 80.5 68 60.3
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 7.1e-13 77.0 54 64.8
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 2.3e-11 72.0 78 48.7
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 8.7e-11 70.1 84 48.8
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 1.1e-10 69.7 45 71.1
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.9e-10 68.9 43 79.1
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.8e-07 57.4 30 86.7
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 5.8e-07 57.4 38 65.8
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 8.4e-06 53.5 48 52.1


User provided reference genes

Program Settings